Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10027840m |
Family | GH28 |
Protein Properties | Length: 366 Molecular Weight: 39958 Isoelectric Point: 4.836 |
Chromosome | Chromosome/Scaffold: 8 Start: 1415712 End: 1418665 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 364 | 0 |
DEGDTKTILIPSGHTFLLQPLQFEGPCGSSPVFQMDGDIVAPSEQRLGLDLNQKYHKWIAFSNVNDLTVFGSGSINGFGSSFWEGNEVNRPTAMDFHNCN NLNISGITSKDSPRNHISINSCNNVVISNIQLFAPEKSPNTDGIDISTSTNVTISKSTIGTGDDCIALNTGSVNINITEIVCGPGHGISIGSLGANGQVA KVENVQVTHCIFNKTSNGARIKTWQGGEGYAKHIYFEHITVIDVINPIIIDQQYIDKRHINFEAEKDSEAVAISDVKFIDFHGTSPNEKFITLNCSKIKP CKNIVVNGIDIVT |
Full Sequence |
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Protein Sequence Length: 366 Download |
ENILHIMFFV NFLYFGIVNC KIYNVLDFGV EGDGQIDDSK AFIEAWKTMC GDEGDTKTIL 60 IPSGHTFLLQ PLQFEGPCGS SPVFQMDGDI VAPSEQRLGL DLNQKYHKWI AFSNVNDLTV 120 FGSGSINGFG SSFWEGNEVN RPTAMDFHNC NNLNISGITS KDSPRNHISI NSCNNVVISN 180 IQLFAPEKSP NTDGIDISTS TNVTISKSTI GTGDDCIALN TGSVNINITE IVCGPGHGIS 240 IGSLGANGQV AKVENVQVTH CIFNKTSNGA RIKTWQGGEG YAKHIYFEHI TVIDVINPII 300 IDQQYIDKRH INFEAEKDSE AVAISDVKFI DFHGTSPNEK FITLNCSKIK PCKNIVVNGI 360 DIVTEG |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-63 | 22 | 362 | 352 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-70 | 24 | 362 | 349 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 8.0e-77 | 21 | 364 | 352 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 9.0e-89 | 8 | 364 | 361 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 5.0e-131 | 1 | 365 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC79138.1 | 0 | 1 | 364 | 2 | 352 | putative polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA20037.1 | 0 | 10 | 363 | 1 | 340 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 1 | 363 | 2 | 360 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_198105.2 | 0 | 1 | 365 | 31 | 383 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199297.1 | 0 | 1 | 364 | 2 | 352 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 1e-18 | 59 | 335 | 30 | 294 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 1ib4_A | 1e-18 | 59 | 335 | 30 | 294 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 1ia5_A | 1e-18 | 59 | 335 | 30 | 294 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 2e-18 | 106 | 362 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 106 | 362 | 55 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CX192293 | 250 | 60 | 308 | 0 |
DY961682 | 265 | 22 | 275 | 0 |
CV538127 | 234 | 50 | 278 | 0 |
CV536748 | 263 | 88 | 346 | 0 |
DV474834 | 262 | 23 | 280 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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