| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10027870m |
| Family | PL1 |
| Protein Properties | Length: 393 Molecular Weight: 43477.8 Isoelectric Point: 4.8166 |
| Chromosome | Chromosome/Scaffold: 8 Start: 8678684 End: 8680086 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| PL1 | 118 | 311 | 0 |
| IIFDRDMVIKLKQDLQVASYKTIDGRGNNVQIAYGPCLTLYKVSNIIINNLYIHDCVPAKRSALSSLGGFSDGDGISIFESRDIWIDHCTLERCYDGLID AVNGSTDITISNSYMLNHNEVMLLGHSDEYSGDQDMRVTIAFNYFGEGLVQRMPRCRHGYFHIVNNIYREWKMYAIGGSANPTIFSQGNVFIAS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 393 Download |
| MSIVCTIFLF VINVSPAFAF AVPKPPVVRL LSTSVTSNST DSCSSANGNP IDECWRCDEK 60 WKDNRKNLAD CAVGFGRDSI GGRAGEFYIV TDSGDDNPLN PSPGTLRYGA TQDQPLWIIF 120 DRDMVIKLKQ DLQVASYKTI DGRGNNVQIA YGPCLTLYKV SNIIINNLYI HDCVPAKRSA 180 LSSLGGFSDG DGISIFESRD IWIDHCTLER CYDGLIDAVN GSTDITISNS YMLNHNEVML 240 LGHSDEYSGD QDMRVTIAFN YFGEGLVQRM PRCRHGYFHI VNNIYREWKM YAIGGSANPT 300 IFSQGNVFIA SNNQFTKEVT KRESADGDDE WKEWNWKSEG DEMVNGAFFT PSGEEDSPSY 360 AKMSSMVARP ASLLKTTHPS VGVLSCKIDQ PC* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-28 | 129 | 308 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-53 | 129 | 308 | 202 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 5.0e-72 | 123 | 312 | 201 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI39737.1 | 0 | 68 | 392 | 2 | 332 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_200383.1 | 0 | 1 | 392 | 1 | 392 | pectate lyase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002265729.1 | 0 | 1 | 392 | 1 | 402 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002317359.1 | 0 | 41 | 392 | 12 | 368 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522747.1 | 0 | 48 | 392 | 48 | 399 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 49 | 356 | 2 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 49 | 356 | 2 | 316 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 9e-19 | 67 | 310 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1pcl_A | 7e-17 | 127 | 312 | 71 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| PDB | 1vbl_A | 4e-16 | 132 | 308 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
