| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10028058m |
| Family | GH33 |
| Protein Properties | Length: 313 Molecular Weight: 34703.4 Isoelectric Point: 6.4018 |
| Chromosome | Chromosome/Scaffold: 8 Start: 9548880 End: 9550524 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH33 | 10 | 273 | 7.9e-21 |
| LETFTYPANSAPFKSCHASTIVEVDKDHFLAAYFGGSREGAPDVKIWLQHFKDGQWDTPVIVDEQPGVPMWNPVLFKLPSQQLLLFYKIGQEVQKWSGCM KRSNDKGRTWTEREQLPPGILGPIKNKPILFEDGTLLCGSSVESWNSWGAWMEVTSDAGRSWRKQGPIYIQGKSLSVIQPVPYQTAAGTLRNWSFAVPTV LPNPNSGIDGVKLKDGRLVLAYNTDSRGVLKVGVSLDDGDSWTDVLTLEDSPGMEFSYPAVIEA | |||
| Full Sequence |
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| Protein Sequence Length: 313 Download |
| MSETEFKVVL ETFTYPANSA PFKSCHASTI VEVDKDHFLA AYFGGSREGA PDVKIWLQHF 60 KDGQWDTPVI VDEQPGVPMW NPVLFKLPSQ QLLLFYKIGQ EVQKWSGCMK RSNDKGRTWT 120 EREQLPPGIL GPIKNKPILF EDGTLLCGSS VESWNSWGAW MEVTSDAGRS WRKQGPIYIQ 180 GKSLSVIQPV PYQTAAGTLR NWSFAVPTVL PNPNSGIDGV KLKDGRLVLA YNTDSRGVLK 240 VGVSLDDGDS WTDVLTLEDS PGMEFSYPAV IEAGDGNVHV TYTYNRTQIK HVVLKTATDI 300 SIRSHTDMVK HA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.009 | 109 | 287 | 196 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 8.0e-28 | 21 | 297 | 349 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 2.0e-88 | 36 | 280 | 281 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM61202.1 | 0 | 1 | 305 | 1 | 327 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_001078763.1 | 0 | 1 | 305 | 12 | 338 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_001154784.1 | 0 | 1 | 305 | 2 | 328 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_568864.2 | 0 | 1 | 305 | 1 | 327 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| RefSeq | NP_851204.1 | 0 | 1 | 305 | 6 | 332 | BNR/Asp-box repeat family protein [Arabidopsis thaliana] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES962106 | 261 | 30 | 268 | 0 |
| DK493056 | 244 | 1 | 222 | 0 |
| EL689016 | 287 | 17 | 281 | 0 |
| EV057257 | 236 | 1 | 214 | 0 |
| EV550034 | 233 | 5 | 215 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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