y
Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10028151m |
Family | GH28 |
Protein Properties | Length: 382 Molecular Weight: 41983.1 Isoelectric Point: 7.354 |
Chromosome | Chromosome/Scaffold: 8 Start: 1412473 End: 1414789 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 54 | 367 | 0 |
GGNNSTLLIPSNKTFLLQPLIFQRPCISPSVQVKFDGKIVAPINKAAWLKYKLLRWVSFTEINGLTIIGSGTIHGRGSSFWEQLHFQRCNDLKIIGITSF NSPKNHISINECKRVTITEIKLVAPHDSPNTDGIDISESSNIDIYDTVIGTGDDCVAINNGSMNINITRMNCGPGHGISVGSLGRDGEQSMVENVQVTNC TFFRTDNGARIKTWPNGKGYARNILFKSLKFTETKNPIIIDQNYVDKGRIDVEESAVAISNVTFTDISGTSWFDEIIKLDCSKVTYCKDIVLDKIDIATT DGNTPIVQCTNVYG |
Full Sequence |
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Protein Sequence Length: 382 Download |
MEIILRILFL LTLLHNVLVN GQIYDVLKFG AKGDGVSDDS KAFVKAWSVM CGCGGNNSTL 60 LIPSNKTFLL QPLIFQRPCI SPSVQVKFDG KIVAPINKAA WLKYKLLRWV SFTEINGLTI 120 IGSGTIHGRG SSFWEQLHFQ RCNDLKIIGI TSFNSPKNHI SINECKRVTI TEIKLVAPHD 180 SPNTDGIDIS ESSNIDIYDT VIGTGDDCVA INNGSMNINI TRMNCGPGHG ISVGSLGRDG 240 EQSMVENVQV TNCTFFRTDN GARIKTWPNG KGYARNILFK SLKFTETKNP IIIDQNYVDK 300 GRIDVEESAV AISNVTFTDI SGTSWFDEII KLDCSKVTYC KDIVLDKIDI ATTDGNTPIV 360 QCTNVYGKSI NAHEVDGCFK R* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-80 | 58 | 365 | 322 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-80 | 23 | 370 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 2.0e-92 | 22 | 379 | 376 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-105 | 25 | 369 | 359 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 7.0e-154 | 21 | 380 | 361 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC79138.1 | 0 | 1 | 380 | 1 | 380 | putative polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA20037.1 | 0 | 18 | 380 | 8 | 369 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 1 | 380 | 1 | 389 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199296.1 | 0 | 50 | 380 | 1 | 331 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199297.1 | 0 | 1 | 380 | 1 | 380 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-16 | 118 | 323 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-16 | 118 | 323 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-16 | 118 | 323 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-16 | 118 | 323 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-16 | 118 | 323 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |