Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10028275m |
Family | GT47 |
Protein Properties | Length: 520 Molecular Weight: 59873.7 Isoelectric Point: 8.3121 |
Chromosome | Chromosome/Scaffold: 8 Start: 11286762 End: 11288321 |
Description | glycosyltransferase 18 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 120 | 462 | 0 |
CDSGRVFVYDMPKIFNEVILQQCDNLNPWSSRCDALSNDGFGKEATSLRNVIPEDLVQSWFWTDQFVTEIIFHNRILNHRCRTLDPESATAFYIPFYAGL AVGQYLWSNYAAADRDRHCKMMTQWVKDQPYWNRSNGWDHFITMGRITWDFRRSKDEDWGSNCIYTPGMRNITRLLIERNSWDHFDVGVPYPTGFHPRSD SDVVKWQDFVRNRRRETLFCFAGAPRAGIENDFRGLLLRHCEESRGACRTVDCTAGKCSNGSSAILETFLGSDFCLQPRGDSFTRRSIFDCMLAGSIPVF FWRRTAYMQYQWFLPDKPDSYSIFIDRNEVKNGTTSIKEVLER |
Full Sequence |
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Protein Sequence Length: 520 Download |
MLPVSNPSSP ERLLKKTRTP DTTAIDRKSS FNSLNSVGNR STYIAASRSH CTWLILSLLS 60 LQLILFLTLR SIPFPHRHIP ENFPSPAAVA VTTTTTTTVV ISADTSSNPP LSSTSSDSRC 120 DSGRVFVYDM PKIFNEVILQ QCDNLNPWSS RCDALSNDGF GKEATSLRNV IPEDLVQSWF 180 WTDQFVTEII FHNRILNHRC RTLDPESATA FYIPFYAGLA VGQYLWSNYA AADRDRHCKM 240 MTQWVKDQPY WNRSNGWDHF ITMGRITWDF RRSKDEDWGS NCIYTPGMRN ITRLLIERNS 300 WDHFDVGVPY PTGFHPRSDS DVVKWQDFVR NRRRETLFCF AGAPRAGIEN DFRGLLLRHC 360 EESRGACRTV DCTAGKCSNG SSAILETFLG SDFCLQPRGD SFTRRSIFDC MLAGSIPVFF 420 WRRTAYMQYQ WFLPDKPDSY SIFIDRNEVK NGTTSIKEVL ERYSKEDVRK MRERVIDLIP 480 NLVYAKSPNG LETFKDAFDV AVDGVFRRFK EQENWYKWR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 2.0e-60 | 119 | 463 | 360 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA97186.1 | 0 | 1 | 517 | 1 | 515 | unnamed protein product [Arabidopsis thaliana] |
RefSeq | NP_201028.1 | 0 | 1 | 519 | 1 | 517 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002270309.1 | 0 | 1 | 518 | 1 | 489 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318866.1 | 0 | 1 | 518 | 1 | 512 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002510893.1 | 0 | 1 | 518 | 1 | 497 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY290373 | 373 | 130 | 501 | 0 |
BU238022 | 260 | 261 | 520 | 0 |
DY267021 | 343 | 159 | 501 | 0 |
EX091911 | 261 | 231 | 491 | 0 |
BU238022 | 20 | 245 | 264 | 0.024 |
Sequence Alignments (This image is cropped. Click for full image.) |
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