| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10028412m |
| Family | AA3 |
| Protein Properties | Length: 580 Molecular Weight: 64273.4 Isoelectric Point: 6.3081 |
| Chromosome | Chromosome/Scaffold: 8 Start: 7102263 End: 7104366 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA3 | 40 | 559 | 0 |
| ARFDYIIIGGGTSGCALAATLSQNANVLVLERGGSPYDNPAAMDIENFANTLLNTTPKAWSQLFISEDGVYNHRARVLGGDSVLNAGFYSRAEKSYVKKA EWDIDEVEAAYEWVEEKLVFKPQVMGWQSALRDGLLEAEVVPYNGFTYDHINGTKIGGTIFDPAGHRHSAANLLEYANPDKIVVYLHALVHKILFTTKGR ERPKAYGVIYEDANGVYHKAELAKNAMNEVILSAGAIGSPQLLMLSGIGPKSHLESHKVDPVVLDQPMVGQGMGDNAMNSVIVPSPQLVELSLIEVVGIT NFDDFIEGGSGLNLSCNLTRRFFDVMNENLSTQSLDLRLNIMENLGVIFHKIDGPVSRGYLELRNTNPDDNPSVTFNYYQEQEDLDRCVKGLETIIKVIN SKTFSKYKYPGVTVHELLGLMLGLPTNLRPRHLSSIFNLKQFCIDTVMTIWHYHGGCQVGRVVDKNYKVLGIDALRVIDGSTFLKSPGTNPQATVMMLGR YMGQRILRERAASREKECYS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 580 Download |
| MDFHILCFIL VVILTFHNPC YSDKGYYGFM KDATLAPTYA RFDYIIIGGG TSGCALAATL 60 SQNANVLVLE RGGSPYDNPA AMDIENFANT LLNTTPKAWS QLFISEDGVY NHRARVLGGD 120 SVLNAGFYSR AEKSYVKKAE WDIDEVEAAY EWVEEKLVFK PQVMGWQSAL RDGLLEAEVV 180 PYNGFTYDHI NGTKIGGTIF DPAGHRHSAA NLLEYANPDK IVVYLHALVH KILFTTKGRE 240 RPKAYGVIYE DANGVYHKAE LAKNAMNEVI LSAGAIGSPQ LLMLSGIGPK SHLESHKVDP 300 VVLDQPMVGQ GMGDNAMNSV IVPSPQLVEL SLIEVVGITN FDDFIEGGSG LNLSCNLTRR 360 FFDVMNENLS TQSLDLRLNI MENLGVIFHK IDGPVSRGYL ELRNTNPDDN PSVTFNYYQE 420 QEDLDRCVKG LETIIKVINS KTFSKYKYPG VTVHELLGLM LGLPTNLRPR HLSSIFNLKQ 480 FCIDTVMTIW HYHGGCQVGR VVDKNYKVLG IDALRVIDGS TFLKSPGTNP QATVMMLGRY 540 MGQRILRERA ASREKECYSS IVSPTQDETS VSYSSSKKL* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 2.0e-9 | 394 | 554 | 169 | + choline dehydrogenase; Validated | ||
| TIGR01810 | betA | 2.0e-35 | 43 | 550 | 569 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| PRK02106 | PRK02106 | 7.0e-36 | 41 | 314 | 323 | + choline dehydrogenase; Validated | ||
| COG2303 | BetA | 3.0e-44 | 42 | 553 | 576 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 42 | 549 | 527 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB11043.1 | 0 | 9 | 539 | 12 | 563 | mandelonitrile lyase-like protein [Arabidopsis thaliana] |
| EMBL | CAB87405.1 | 0 | 1 | 539 | 1 | 557 | ADHESION OF CALYX EDGES-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001119417.1 | 0 | 30 | 549 | 1 | 543 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_200008.1 | 0 | 9 | 549 | 12 | 576 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | NP_567032.1 | 0 | 1 | 556 | 1 | 574 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ju2_B | 0 | 23 | 555 | 8 | 523 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 1ju2_A | 0 | 23 | 555 | 8 | 523 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_B | 0 | 23 | 552 | 8 | 520 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdp_A | 0 | 23 | 552 | 8 | 520 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
| PDB | 3gdn_B | 0 | 23 | 552 | 8 | 520 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
