Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10028546m |
Family | CE8 |
Protein Properties | Length: 382 Molecular Weight: 42475.8 Isoelectric Point: 6.1731 |
Chromosome | Chromosome/Scaffold: 8 Start: 8642788 End: 8644643 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 83 | 374 | 0 |
IVVDKNGGGDSVTVQGAVDMVPYSNSQRVKIFILPGFYREKVSVPRSKPYISFIGNESYAEDTVISWSDKASDLDSDGKELGTYRTASVSIESDFFCATA ITFENTVVAEAGEKGKQAVALRIIGDKAVFYKVRVLGSQDTLFDESGSHYFYQCYIQGNVDFIFGNGKSLYQDCDIHSTAKRYGAIAAHHRDSETEDTGF SFVNCDINGTGMVYLGRAWGNYSRTVYSNCFIADIITPVGWSDWKDPERQRKVMFGEYNCRGRGAERGGRAPWSKTLTRDEVKPFLGREFIY |
Full Sequence |
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Protein Sequence Length: 382 Download |
MKVEAFIPAV LLLCFGVMFG LKSSCALQIG TEPRNFISWE DLRVVEDGRT ETSFSVKEDT 60 SNWVNTNAKA KAKGNATSVI RVIVVDKNGG GDSVTVQGAV DMVPYSNSQR VKIFILPGFY 120 REKVSVPRSK PYISFIGNES YAEDTVISWS DKASDLDSDG KELGTYRTAS VSIESDFFCA 180 TAITFENTVV AEAGEKGKQA VALRIIGDKA VFYKVRVLGS QDTLFDESGS HYFYQCYIQG 240 NVDFIFGNGK SLYQDCDIHS TAKRYGAIAA HHRDSETEDT GFSFVNCDIN GTGMVYLGRA 300 WGNYSRTVYS NCFIADIITP VGWSDWKDPE RQRKVMFGEY NCRGRGAERG GRAPWSKTLT 360 RDEVKPFLGR EFIYGDQWLR L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-96 | 82 | 380 | 299 | + putative pectinesterase | ||
PLN02665 | PLN02665 | 5.0e-97 | 81 | 379 | 302 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 4.0e-106 | 81 | 379 | 301 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-121 | 81 | 381 | 303 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 0 | 1 | 381 | 382 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE67559.1 | 0 | 36 | 381 | 33 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_200370.1 | 0 | 1 | 381 | 1 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 71 | 381 | 52 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 81 | 381 | 18 | 318 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 7 | 381 | 31 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 83 | 380 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 6e-37 | 79 | 380 | 1 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 2e-17 | 84 | 367 | 34 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 8e-16 | 76 | 260 | 1 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 8e-16 | 76 | 260 | 1 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |