| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10028560m |
| Family | GH5 |
| Protein Properties | Length: 433 Molecular Weight: 48658 Isoelectric Point: 9.8113 |
| Chromosome | Chromosome/Scaffold: 8 Start: 13172052 End: 13173857 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 43 | 364 | 2.6e-34 |
| GYPYYANGFNAYWLMYVSSDPSQRSKLPAAFQDASRHGLTVARTWAFSDGGYRALQSSPGSYNEDMFQGLDFAIAEARRHGIKLILSFANNYDIFGGKKQ YVDWARSRGRPVSSEDDFFTDSLVKDFYKNHIKAVLNRFNTFTKVHYKDDPTIMAWELMNEPRCPSDPTGRTIQAWITEMAAHVKSLDSNHLLEAGLEGF YGQSSPQRKTLNPPGQFGTDFIANNRIPGIDFVTVHSYPDEWFTDSSEQSQMDFLNKWLDAHIEDAQTVVRKPIILAEFGKSMKKSGYTPAQRDFVFNTV YNKIYGSAKRGGAAAGGLFWQL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 433 Download |
| MKLLGLITFL AILIQQSCLE LGADALSSDG FVRAKGVQFT LNGYPYYANG FNAYWLMYVS 60 SDPSQRSKLP AAFQDASRHG LTVARTWAFS DGGYRALQSS PGSYNEDMFQ GLDFAIAEAR 120 RHGIKLILSF ANNYDIFGGK KQYVDWARSR GRPVSSEDDF FTDSLVKDFY KNHIKAVLNR 180 FNTFTKVHYK DDPTIMAWEL MNEPRCPSDP TGRTIQAWIT EMAAHVKSLD SNHLLEAGLE 240 GFYGQSSPQR KTLNPPGQFG TDFIANNRIP GIDFVTVHSY PDEWFTDSSE QSQMDFLNKW 300 LDAHIEDAQT VVRKPIILAE FGKSMKKSGY TPAQRDFVFN TVYNKIYGSA KRGGAAAGGL 360 FWQLLGNGMD NFQDGYGIIL SQSSSTVNVI SQQSRKLTLI RKIFARMINV RKWKRARGQG 420 QVRKRGHNNI NS* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12876 | Cellulase-like | 0.002 | 188 | 280 | 104 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
| pfam00150 | Cellulase | 3.0e-7 | 88 | 322 | 241 | + Cellulase (glycosyl hydrolase family 5). | ||
| COG3934 | COG3934 | 5.0e-24 | 35 | 324 | 297 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABB45852.1 | 0 | 1 | 427 | 1 | 427 | hypothetical protein [Thellungiella halophila] |
| GenBank | ACN78662.1 | 0 | 1 | 410 | 1 | 408 | endo-beta-mannanase [Actinidia arguta] |
| GenBank | ACU18982.1 | 0 | 1 | 419 | 1 | 415 | unknown [Glycine max] |
| RefSeq | NP_201447.1 | 0 | 1 | 427 | 1 | 427 | (1-4)-beta-mannan endohydrolase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002281804.1 | 0 | 1 | 431 | 1 | 433 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 26 | 398 | 1 | 370 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 41 | 402 | 22 | 378 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 41 | 402 | 22 | 378 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 41 | 402 | 22 | 378 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 41 | 402 | 22 | 378 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
