Basic Information | |
---|---|
Species | Capsella rubella |
Cazyme ID | Carubv10028651m |
Family | CE8 |
Protein Properties | Length: 320 Molecular Weight: 35233.1 Isoelectric Point: 8.0109 |
Chromosome | Chromosome/Scaffold: 8 Start: 6749198 End: 6751191 |
Description | methylesterase PCR A |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 8 | 303 | 0 |
LVVSKDGTGDFKTINEAVAAAPNLSKTRFIIFVKKGIYDEIVKIGTEKTNLSLVGEGRDSTIITGSLNVKDGTKTYDSATLAIDGSGFIGQDLCIRNTAG PEKDAAVALRVSGDQVVFYRCDIVGYQDTLYAHSKRQFYRDCYITGTVDFICGQASAVFQYCRIEVRKPIAKQSNVITAQKRDLKSLESCFTIQKCNITA SKDLVPVKGTVKSYLGRPWGVLSRVVFMESFIDDLIDPAGWIPWDSDITRLSTLYYGEYENTGPGADTTKRVQWKGFRKITDPKEAANFTVGELLE |
Full Sequence |
---|
Protein Sequence Length: 320 Download |
SLKRNPDLVV SKDGTGDFKT INEAVAAAPN LSKTRFIIFV KKGIYDEIVK IGTEKTNLSL 60 VGEGRDSTII TGSLNVKDGT KTYDSATLAI DGSGFIGQDL CIRNTAGPEK DAAVALRVSG 120 DQVVFYRCDI VGYQDTLYAH SKRQFYRDCY ITGTVDFICG QASAVFQYCR IEVRKPIAKQ 180 SNVITAQKRD LKSLESCFTI QKCNITASKD LVPVKGTVKS YLGRPWGVLS RVVFMESFID 240 DLIDPAGWIP WDSDITRLST LYYGEYENTG PGADTTKRVQ WKGFRKITDP KEAANFTVGE 300 LLEGHLWLNS TGVPYDIGL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02314 | PLN02314 | 2.0e-128 | 3 | 316 | 314 | + pectinesterase | ||
PLN02201 | PLN02201 | 5.0e-129 | 4 | 319 | 316 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02488 | PLN02488 | 3.0e-160 | 2 | 319 | 318 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 7.0e-165 | 5 | 319 | 315 | + pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 3.0e-170 | 7 | 304 | 298 | + Pectinesterase. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172624.1 | 0 | 1 | 315 | 240 | 553 | PMEPCRA (METHYLESTERASE PCR A); enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
RefSeq | NP_172625.3 | 0 | 1 | 319 | 209 | 524 | pectin methylesterase, putative [Arabidopsis thaliana] |
RefSeq | NP_192302.3 | 0 | 1 | 319 | 209 | 524 | enzyme inhibitor/ pectinesterase [Arabidopsis thaliana] |
Swiss-Prot | Q1JPL7 | 0 | 1 | 315 | 240 | 553 | PME18_ARATH RecName: Full=Pectinesterase/pectinesterase inhibitor 18; AltName: Full=AtPMEpcrA; Contains: RecName: Full=Pectinesterase inhibitor 18; AltName: Full=Pectin methylesterase inhibitor 18; Contains: RecName: Full=Bifunctional pectinesterase 18/rRNA N-glycosylase; Short=PE 18; AltName: Full=Ribosome-inactivating protein; AltName: Full=Pectin methylesterase 18; AltName: Full=Pectin methylesterase 4; Short=AtPME4; Flags: Precursor |
RefSeq | XP_002266980.1 | 0 | 7 | 319 | 217 | 528 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 7 | 319 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 6 | 319 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 3e-29 | 7 | 302 | 5 | 334 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 3e-29 | 7 | 302 | 5 | 334 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 3e-29 | 7 | 302 | 5 | 334 | A Chain A, Pectin Methylesterase From Carrot |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO777316 | 318 | 5 | 320 | 0 |
GO241843 | 291 | 16 | 305 | 0 |
CV886778 | 282 | 39 | 320 | 0 |
CO475715 | 291 | 7 | 297 | 0 |
GO241839 | 297 | 16 | 312 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|