| Basic Information | |
|---|---|
| Species | Capsella rubella |
| Cazyme ID | Carubv10028673m |
| Family | GH47 |
| Protein Properties | Length: 625 Molecular Weight: 70398.2 Isoelectric Point: 4.5797 |
| Chromosome | Chromosome/Scaffold: 8 Start: 2148583 End: 2152628 |
| Description | Glycosyl hydrolase family 47 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH47 | 47 | 472 | 0 |
| MFYHAFDGYMNNAFPLDELRPLSCQGEDTLGGYALTLIDSLDTLALLGDRERFTSSVEWIGKNLQFNINKTVSVFETTIRVLGGLLSAHLIASDYATGMR IPSYDNELLVLAEDLTRRMLPAFDTPTGIPFGSVNLMYGVDKHESKITSTAGGGTLSLEFGVLSRLTNDPVFEQVAKNAVRGLWARRSNLDLVGAHINVF TGEWTQKDAGIGTSIDSFYEYLLKAYILFGDEEYLYIFQEAYRSAMQYLHKDPWYVEVNMDSAAIVWPVFNSLQAFWPGLQVLAGDVDPAIRTHTAFFSV WKRYGFTPEGFNLATLSVQYGQKSYPLRPELIESTYWLYKATKDPRYLDAGRDFVASLQYGAKCPCGYCHITDVELHKQEDHMESFFLAETVKYLWLLFD LAVDSDNLVDNGPYKYIFSTEGHLLP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 625 Download |
| MESNYRWLLI SILISLTFSS LVLHHGVLAE SVKPEEAKQL RDEVRGMFYH AFDGYMNNAF 60 PLDELRPLSC QGEDTLGGYA LTLIDSLDTL ALLGDRERFT SSVEWIGKNL QFNINKTVSV 120 FETTIRVLGG LLSAHLIASD YATGMRIPSY DNELLVLAED LTRRMLPAFD TPTGIPFGSV 180 NLMYGVDKHE SKITSTAGGG TLSLEFGVLS RLTNDPVFEQ VAKNAVRGLW ARRSNLDLVG 240 AHINVFTGEW TQKDAGIGTS IDSFYEYLLK AYILFGDEEY LYIFQEAYRS AMQYLHKDPW 300 YVEVNMDSAA IVWPVFNSLQ AFWPGLQVLA GDVDPAIRTH TAFFSVWKRY GFTPEGFNLA 360 TLSVQYGQKS YPLRPELIES TYWLYKATKD PRYLDAGRDF VASLQYGAKC PCGYCHITDV 420 ELHKQEDHME SFFLAETVKY LWLLFDLAVD SDNLVDNGPY KYIFSTEGHL LPLTPQISLA 480 REHCSYLGGY CLSNFTKPEQ EVLEEESNHN ERSNIYPYHE SFPVTGLIKG LCPGLTHAQK 540 YGLSYVQPEK TDREDVNQPK PETTSSSIVL ISDTVEKKQQ VDEEGFSSQS EPIMTISGGS 600 SNDQNSQELT LLESETDDRR LYSS* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PTZ00470 | PTZ00470 | 2.0e-75 | 35 | 476 | 485 | + glycoside hydrolase family 47 protein; Provisional | ||
| pfam01532 | Glyco_hydro_47 | 9.0e-171 | 47 | 473 | 462 | + Glycosyl hydrolase family 47. Members of this family are alpha-mannosidases that catalyze the hydrolysis of the terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2). | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004571 | mannosyl-oligosaccharide 1,2-alpha-mannosidase activity |
| GO:0005509 | calcium ion binding |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26354.1 | 0 | 30 | 566 | 28 | 611 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_199184.1 | 0 | 1 | 624 | 1 | 624 | glycoside hydrolase family 47 protein [Arabidopsis thaliana] |
| RefSeq | XP_002280131.1 | 0 | 30 | 615 | 28 | 636 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311656.1 | 0 | 29 | 582 | 1 | 565 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517026.1 | 0 | 7 | 623 | 8 | 617 | Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4ayr_A | 0 | 28 | 445 | 1 | 413 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 4ayq_A | 0 | 28 | 445 | 1 | 413 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 4ayp_A | 0 | 28 | 445 | 1 | 413 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 4ayo_A | 0 | 28 | 445 | 1 | 413 | A Chain A, Structure Of The Gh47 Processing Alpha-1,2-mannosidase From Caulobacter Strain K31 |
| PDB | 1fmi_A | 0 | 47 | 473 | 17 | 456 | A Chain A, Crystal Structure Of Human Class I Alpha1,2-Mannosidase |
