| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10000150m |
| Family | GH2 |
| Protein Properties | Length: 993 Molecular Weight: 112529 Isoelectric Point: 6.6877 |
| Chromosome | Chromosome/Scaffold: 5 Start: 32939571 End: 32945214 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 42 | 771 | 0 |
| AKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREYYTFWFFTTFQCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTD ILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPHLVSSFFD NYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWS HLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDG RGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPEDINKALKNDLKLHPYFKNSNETGNFTEDLSLSVQDPSQYLDGTRIYIQGSLWD GFADGKGNFTDGPYEIQYPEDFFKDSFYQYGFNPEVGSVGMPVAATIRATMPPEGWQIPVFKQGSDGYIEEVPNPIWKYHKYIPYSKPGKVHDQILLYGI PKDLDDFCLKAQLVNYIQYRALLEGWSSRMWSKYTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLASYFIEVVNTTSQELSDVAI EASVWDLDGACPYYKVTEKLSVPPKKVVSI | |||
| Full Sequence |
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| Protein Sequence Length: 993 Download |
| MGMLSASIGK TKLDSGWLAA RSTEVGLSGT QLTTSHPPTG PAKPWMEAVV PGTVLATLVK 60 NKAVPDPFYG LENEMILDIA DSGREYYTFW FFTTFQCKLS ENQHLDLNFR AINYSAEVYL 120 NGQKRVLQKG MFRRHSLDVT DILHPDGQNL LAVLVHPPDH PGTIPPEGGQ GGDHEIGKDV 180 ATQYVEGWDW IAPIRDRNTG IWDEVSISVT GPVKIIDPHL VSSFCQPVKI IDPHLVSSFF 240 DNYTRVYLHA STELENRSTW VAECSLSIQV TTDLEGGVCL VEHLQTQHLS ISPGAHVQYT 300 FPQLFFYKPN LWWPNGMGKQ SLYTVRISVD VKGYGESDLW SHLFGFRKIE SHIDNATGGR 360 LFKVNGQPIF IRGGNWILSD GLLRLSKKRY KTDIKFHADM NMNMIRCWGG GLAERPEFYH 420 YCDIYGLLVW QEFWITGDVD GRGVPVSNPD GPLDHDLFML CARDTVKLLR NHPSLALWVG 480 GNEQVPPEDI NKALKNDLKL HPYFKNSNET GNFTEDLSLS VQDPSQYLDG TRIYIQGSLW 540 DGFADGKGNF TDGPYEIQYP EDFFKDSFYQ YGFNPEVGSV GMPVAATIRA TMPPEGWQIP 600 VFKQGSDGYI EEVPNPIWKY HKYIPYSKPG KVHDQILLYG IPKDLDDFCL KAQLVNYIQY 660 RALLEGWSSR MWSKYTGVLI WKNQNPWTGL RGQFYDHLLD QTAGFYGCRC AAEPIHVQLN 720 LASYFIEVVN TTSQELSDVA IEASVWDLDG ACPYYKVTEK LSVPPKKVVS IAEMKYPKTK 780 NPKPVYFLLL KLYNMSDYGI ISRNFYWLHL PGGDYKLLEP YRKKNIPLKL TSQIFIKGST 840 YEVEMQVHNR SKKQDPKRLT YKNNFTTVPV DGDFNMASTE PVNSATEEKQ EAGLFRRICR 900 HFKKDTDSLK VAELNGTDSG VAFFLHFSVR GWSKSHKEGE DTRILPVHYS DNYFSLAPGE 960 VMPIKISFEV PHGVTPKVTL HGWNYHVGQT IL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK10150 | PRK10150 | 7.0e-7 | 63 | 483 | 454 | + beta-D-glucuronidase; Provisional | ||
| pfam02837 | Glyco_hydro_2_N | 2.0e-7 | 88 | 165 | 79 | + Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. | ||
| pfam00703 | Glyco_hydro_2 | 2.0e-10 | 228 | 347 | 120 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK10340 | ebgA | 1.0e-11 | 102 | 483 | 397 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| COG3250 | LacZ | 8.0e-36 | 47 | 496 | 456 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO27794.1 | 0 | 6 | 992 | 2 | 976 | glycosyl hydrolase [Gossypium hirsutum] |
| EMBL | CAN82620.1 | 0 | 6 | 991 | 2 | 972 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002284576.1 | 0 | 6 | 991 | 2 | 972 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319539.1 | 0 | 6 | 991 | 2 | 972 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512381.1 | 0 | 6 | 992 | 2 | 973 | beta-mannosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 0 | 38 | 808 | 74 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0 | 38 | 808 | 74 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 0 | 38 | 808 | 74 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY265693 | 310 | 1 | 309 | 0 |
| ES793920 | 368 | 391 | 756 | 0 |
| DY284833 | 319 | 1 | 319 | 0 |
| EY703266 | 301 | 625 | 925 | 0 |
| DY284833 | 21 | 316 | 336 | 0.85 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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