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Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10000543m |
Family | PL4 |
Protein Properties | Length: 650 Molecular Weight: 73686.1 Isoelectric Point: 4.4471 |
Chromosome | Chromosome/Scaffold: 5 Start: 35320978 End: 35325107 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 6 | 620 | 0 |
VNLLIQDRHVVLDNGILEVTFSNPGGIVTGIRYNDIDNLLEVLNDELNRGYWDLVWNTPGSTGTRGIFDVIQGTSFDVIVENEDQVEISFTRTWDSSLEG KLVPLNIDKRFVMLRGSSGFYTYSIYEHLEEWPGFNLGETRIAFKLRKDKFHYMAIADNRQRYMPLPDDRVPPRGQPLAYPEAVLLVNPVEPDFKGEVDD KYQYSCDNKDINVHGWICTDPPVGFWHITPSAEFRTGGPQKQNLTSHVGPTTLSVFVSAHYSGEDLVPKFNAGEAWKKVFGPVFVYCNSAFDGDDPLSLW DDAKMQMSVETESWPYSFPASDDFPKSDQRGNVSGRLLVQDEYISDDYISASGAYVGLALPGDAGSWQRECKDYQFWTSADEDGYFSITAVRAGDYNLYA WVPGFIGDYRYDVVVNITPGFDIDMGDLVYEPPRNGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYLDHPDRFRQYGLWERYAELYPDGDLVYTVGSSDY TKDWFFGQVTRKKDNNSYQGTTWQIKFELDNVNQNSTYILRVAIASANLSELQVRINDPSTNRPLFSSGLIGRDNSIARHGIHGLYWLFNVDVPGARLVS GDNTIFFIQPRSTSP |
Full Sequence |
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Protein Sequence Length: 650 Download |
MSPPAVNLLI QDRHVVLDNG ILEVTFSNPG GIVTGIRYND IDNLLEVLND ELNRGYWDLV 60 WNTPGSTGTR GIFDVIQGTS FDVIVENEDQ VEISFTRTWD SSLEGKLVPL NIDKRFVMLR 120 GSSGFYTYSI YEHLEEWPGF NLGETRIAFK LRKDKFHYMA IADNRQRYMP LPDDRVPPRG 180 QPLAYPEAVL LVNPVEPDFK GEVDDKYQYS CDNKDINVHG WICTDPPVGF WHITPSAEFR 240 TGGPQKQNLT SHVGPTTLSV FVSAHYSGED LVPKFNAGEA WKKVFGPVFV YCNSAFDGDD 300 PLSLWDDAKM QMSVETESWP YSFPASDDFP KSDQRGNVSG RLLVQDEYIS DDYISASGAY 360 VGLALPGDAG SWQRECKDYQ FWTSADEDGY FSITAVRAGD YNLYAWVPGF IGDYRYDVVV 420 NITPGFDIDM GDLVYEPPRN GPTLWEIGIP DRSAAEFYVP DPNPKYINKL YLDHPDRFRQ 480 YGLWERYAEL YPDGDLVYTV GSSDYTKDWF FGQVTRKKDN NSYQGTTWQI KFELDNVNQN 540 STYILRVAIA SANLSELQVR INDPSTNRPL FSSGLIGRDN SIARHGIHGL YWLFNVDVPG 600 ARLVSGDNTI FFIQPRSTSP FQGIMYDYIR FEGPSDTTSK KETSRLLEK* 660 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.003 | 383 | 429 | 47 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 4.0e-31 | 334 | 433 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-53 | 445 | 632 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-71 | 11 | 304 | 297 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 5.0e-97 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 639 | 1 | 649 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 639 | 1 | 620 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 633 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 641 | 1 | 640 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 639 | 1 | 639 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479599 | 294 | 1 | 294 | 0 |
DW479600 | 298 | 1 | 298 | 0 |
DT552229 | 293 | 17 | 308 | 0 |
GW864372 | 311 | 147 | 457 | 0 |
DT729214 | 263 | 71 | 333 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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