y
Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10000805m |
Family | GH14 |
Protein Properties | Length: 539 Molecular Weight: 60461.6 Isoelectric Point: 5.791 |
Chromosome | Chromosome/Scaffold: 5 Start: 29131689 End: 29136615 |
Description | beta-amylase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 253 | 533 | 0 |
YVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEI GKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQ QSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEETKIIVKV |
Full Sequence |
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Protein Sequence Length: 539 Download |
MNTIENIDEN PNQELLTQPP TQTQNQTQSH SRRPRGFAAT AAAAAAAAAA ANNNSNNNNN 60 NASSGKGKKE REKEKERTKL RERHRRAITS RMLAGLRQYG NFPLPARADM NDVLAALARE 120 AGWTVEPDGT TYRLSNQSQS HHHLHQQMAA AAATTTAAFP VRSVESPLSV KNCSVKASVE 180 CQPSVLRIDE SLSPASFDSV VIPERDSRGG EFNASTSPIN NSVECLEADQ LIQDVRAGEH 240 EDDFTGTPYI PVYVMLANHV INNFCQLVDP ELIRQEISHM KALNVDGVIV NCWWGIVEGW 300 NPQKYAWSGY RELFNIIREF NLKVQVVMAF HEYGANDSGD AWISLPQWVM EIGKGNQDIF 360 FTDREGRRNT ECLSWGVDKE RVLNGRTGIE VYFDFMRSFR TEFDDLFVAG LICAVEIGLG 420 PSGELKYPSL SERMGWRYPG IGEFQCYDRY LQQSLRKAAK LRGHSFWARG PDNAGQYNSL 480 PHETGFFCER GDYDSYYGRF FLNWYAQTLI DHADNVLSLA SLAFEETKII VKVCTELS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00197 | PLN00197 | 2.0e-78 | 250 | 533 | 289 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 3.0e-89 | 250 | 527 | 280 | + beta-amylase | ||
PLN02801 | PLN02801 | 7.0e-106 | 249 | 524 | 276 | + beta-amylase | ||
PLN02705 | PLN02705 | 0 | 87 | 533 | 450 | + beta-amylase | ||
PLN02905 | PLN02905 | 0 | 87 | 533 | 454 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI29216.1 | 0 | 78 | 533 | 19 | 460 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199343.1 | 0 | 9 | 533 | 15 | 538 | BMY2 (BETA-AMYLASE 2); beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
RefSeq | XP_002270680.1 | 0 | 71 | 533 | 70 | 518 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002304400.1 | 0 | 2 | 533 | 5 | 522 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519919.1 | 0 | 7 | 533 | 1 | 520 | Beta-amylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1q6g_A | 0 | 249 | 533 | 11 | 294 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1wdr_A | 0 | 249 | 533 | 11 | 294 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1wds_A | 0 | 249 | 533 | 11 | 294 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
PDB | 1v3i_A | 0 | 249 | 533 | 11 | 294 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 1wdp_A | 0 | 249 | 533 | 11 | 294 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY757606 | 237 | 296 | 532 | 0 |
EY780069 | 257 | 271 | 526 | 0 |
JG649066 | 240 | 294 | 533 | 0 |
EY761857 | 178 | 199 | 376 | 0 |
EY761857 | 83 | 376 | 458 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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