Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10000808m |
Family | AA7 |
Protein Properties | Length: 539 Molecular Weight: 60494.9 Isoelectric Point: 6.353 |
Chromosome | Chromosome/Scaffold: 5 Start: 29385814 End: 29387910 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 69 | 298 | 0 |
NLRFNTSSTPKPVLIVAAMHESHVQAAIICAKKHNLQMKIRSGGHDYEGLSYVSNIPFFILDMFNLRSIDVDIESETAWVQAGAILGEVFYRIAEKSKTH GFPAGVCPTVGVGGHFSAGGYGNMMRKYGLSVDNIVDAKLVDVNGRILDRNSMGEDLFWAIRGGGASFGVVLAYKINIVPVPETVTVFKVEKTLEQDATD AVDKWQHVAHKLDDGLFIRLVLDVVNSSTR |
Full Sequence |
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Protein Sequence Length: 539 Download |
MEMVILKPAV ISLLSVLVLY ISWSWRVNSH ESFNQCLLNN SPPSHPIFQA IHTPQNSSYS 60 SVLQSYIRNL RFNTSSTPKP VLIVAAMHES HVQAAIICAK KHNLQMKIRS GGHDYEGLSY 120 VSNIPFFILD MFNLRSIDVD IESETAWVQA GAILGEVFYR IAEKSKTHGF PAGVCPTVGV 180 GGHFSAGGYG NMMRKYGLSV DNIVDAKLVD VNGRILDRNS MGEDLFWAIR GGGASFGVVL 240 AYKINIVPVP ETVTVFKVEK TLEQDATDAV DKWQHVAHKL DDGLFIRLVL DVVNSSTRTG 300 EKTVRATFIA LFLGGSERLL TITDEGFPEL GLTRSDCTEL SWIDSVVYWG SFPAGTPASV 360 LLDRTPLTLS SLKRKSDYVK EPIPREGLEG LWKKMIELER PYMNFNPYGG KMHEVSATES 420 PFPHRAGNLW KIQYVTNWNE EGVDAANYYI DLTRQLYDYL TPFVSKNPRQ SFLAYRDLDL 480 GTNNHKFETG YSEGRAYGIN YFLENFDRLV EIKTKVDPDN FFRNEQSIPV LPPLHDVE* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02805 | PLN02805 | 0.003 | 53 | 268 | 232 | + D-lactate dehydrogenase [cytochrome] | ||
TIGR00387 | glcD | 2.0e-5 | 128 | 402 | 289 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
pfam08031 | BBE | 2.0e-14 | 471 | 529 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
COG0277 | GlcD | 2.0e-22 | 61 | 531 | 484 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam01565 | FAD_binding_4 | 6.0e-28 | 80 | 217 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN80091.1 | 0 | 23 | 532 | 22 | 530 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299026.1 | 0 | 10 | 532 | 1 | 524 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333959.1 | 0 | 9 | 532 | 5 | 531 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523151.1 | 0 | 30 | 532 | 34 | 537 | Reticuline oxidase precursor, putative [Ricinus communis] |
RefSeq | XP_002523152.1 | 0 | 28 | 532 | 7 | 509 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 28 | 535 | 2 | 517 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 30 | 531 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 30 | 531 | 10 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 29 | 531 | 7 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 29 | 531 | 7 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY262774 | 389 | 147 | 533 | 0 |
DY272344 | 362 | 142 | 501 | 0 |
DY293389 | 398 | 142 | 531 | 0 |
FC892333 | 307 | 195 | 501 | 0 |
DY267838 | 382 | 163 | 539 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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