Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10000817m |
Family | AA7 |
Protein Properties | Length: 537 Molecular Weight: 60371.4 Isoelectric Point: 6.9924 |
Chromosome | Chromosome/Scaffold: 5 Start: 5213079 End: 5216672 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 68 | 310 | 0 |
NLIFSSPPNPKPLFIITPFHVSEIQAAIKCSKNNGLQIRVRSGGHDHEGLSSISDVPFIIVDLVNFSEISVDAEAKTAWVQSGASLGELNYRIAEKSQNL LAVPVGTCPGVGVGGHFSGGGYGALLRKYGIAADHIVDAHMIDAKGRFLTRESMGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNA TRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGV |
Full Sequence |
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Protein Sequence Length: 537 Download |
MKPHNFLCPK IVSLIFVLLI KFQGVAFAAE NHEKFLKCLS LQSDTIAKVI YTQNNSSYSS 60 VLKASIQNLI FSSPPNPKPL FIITPFHVSE IQAAIKCSKN NGLQIRVRSG GHDHEGLSSI 120 SDVPFIIVDL VNFSEISVDA EAKTAWVQSG ASLGELNYRI AEKSQNLLAV PVGTCPGVGV 180 GGHFSGGGYG ALLRKYGIAA DHIVDAHMID AKGRFLTRES MGEDLFWAIR GSGGSSFGII 240 VSWKIKLVAV PPTVTVFAVP RTLEQNATRL LHKWQYIADR VHEDLFISPF LYRENSTMVC 300 LFTSLFLGGV DRLLPLMQQS FPELGLTKED CREMSFIESV VYLDGFKIRE SINADVLINE 360 RFVKRFFIGK ADFVTVPIPV EALEGAYDLF YEEDPRTYGL LVFFPYGGKM SEISESEIPF 420 PHRAGNIYTL LYYAEWQDAT DEAYQRHLNM VRKLFNYMTP YVTKNPRAAY INNRDLDIGT 480 NNKLGHTSVQ EASIWGKKYF KNNFYRLVQV KTMVDPEDFF RNEQSIPPFN LVKDEL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 3.0e-8 | 73 | 228 | 163 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 5.0e-15 | 469 | 527 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 2.0e-20 | 79 | 217 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002330609.1 | 0 | 28 | 530 | 24 | 532 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332196.1 | 0 | 28 | 530 | 17 | 525 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333020.1 | 0 | 7 | 530 | 8 | 531 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333339.1 | 0 | 7 | 530 | 8 | 531 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334045.1 | 0 | 28 | 530 | 24 | 529 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 29 | 529 | 1 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 4dns_B | 0 | 27 | 529 | 5 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 27 | 529 | 5 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 33 | 529 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 33 | 529 | 9 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |