| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10002058m |
| Family | AA7 |
| Protein Properties | Length: 291 Molecular Weight: 31881.5 Isoelectric Point: 9.0698 |
| Chromosome | Chromosome/Scaffold: 5 Start: 5260412 End: 5262567 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA7 | 46 | 232 | 0 |
| LVFSAPTNQKPLFIITPFHVSEIQAAIKCSKKSGLQIRVRSGGHDLEGLSSISDVPFIIVDLINFSEISIDAEAKTAWVQSGATVGQLNYRIAEKSQNLL AFPVGTCPGVAVGGHFSGGGYGALLRKYGVAADHIVDAHMIDARGRFLNRESMGEDLFWAIRGGGGPSFGIIISWKIELVDVPSTKL | |||
| Full Sequence |
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| Protein Sequence Length: 291 Download |
| MKRHAPENHE NFLKCLSLQS DTISKVIYTQ NNSSYSSVLT SSIQNLVFSA PTNQKPLFII 60 TPFHVSEIQA AIKCSKKSGL QIRVRSGGHD LEGLSSISDV PFIIVDLINF SEISIDAEAK 120 TAWVQSGATV GQLNYRIAEK SQNLLAFPVG TCPGVAVGGH FSGGGYGALL RKYGVAADHI 180 VDAHMIDARG RFLNRESMGE DLFWAIRGGG GPSFGIIISW KIELVDVPST KLLHKNLRTK 240 MQQSYFTNGN TLQIGSMKIY SSHPSYIERI LLWSVYSHPC FLVGLTGYFH * 300 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG0277 | GlcD | 2.0e-10 | 53 | 205 | 162 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 3.0e-23 | 56 | 194 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002277281.1 | 0 | 9 | 260 | 28 | 269 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299020.1 | 0 | 7 | 241 | 26 | 267 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002299022.1 | 0 | 7 | 243 | 19 | 255 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330610.1 | 0 | 9 | 244 | 28 | 264 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523148.1 | 0 | 7 | 230 | 25 | 250 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 10 | 229 | 5 | 226 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 4 | 228 | 5 | 228 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 4 | 228 | 5 | 228 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 6 | 239 | 5 | 237 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 6 | 239 | 5 | 237 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY298629 | 289 | 5 | 289 | 0 |
| CX665622 | 240 | 5 | 244 | 0 |
| FC911731 | 240 | 5 | 244 | 0 |
| FC911731 | 36 | 240 | 275 | 0.00000003 |
| CX665622 | 39 | 240 | 278 | 0.000007 |
| Orthologous Group | |||||
|---|---|---|---|---|---|
| Species | ID | ||||
| Citrus clementina | Ciclev10017593m | Ciclev10018258m | |||
| Citrus sinensis | orange1.1g045207m | ||||
| Malus domestica | MDP0000268860.298.476 | MDP0000268860.298.476 | |||
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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