Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10003131m |
Family | PL4 |
Protein Properties | Length: 636 Molecular Weight: 72720.1 Isoelectric Point: 5.3782 |
Chromosome | Chromosome/Scaffold: 5 Start: 35337110 End: 35341788 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 4 | 605 | 0 |
GVQLQVQDKHVVMDNGILQVTLSNPEGIVTGIQFQGIDNLLEVRNAEYNRGYWDLVWSKPGKKATNFTVIVENEEQVEVSFTRLWNSSLEGQVVPLNIDK RFIMLHGSSGFYTYAIFEHLGEWPAFNIDNIRMAFKLNKDKFHFMSIADNRQRLMPLPDDRLPGRGQVLAYPEAVLLVNPVEPEFKGEVDDKYLYSCKSQ DIRVHGWICADPPVGFWQITPSIESRSAGPLKQYLASHVGPTSLALFHSVHYSGADLILRFGHSEPWKKVFGPIFIYLNSLSNEDDPLLLWEDAKQQMIF EVQSWPYDFPASKDFPQSDQRGTLHGRLLVEDRYINMDYIAANGAYVGLAPPGNAGSWQRECKGYQFWARANADGYFYIDHIRTGNYSLYAFVPGFIGDY KYDFNITIIEGSYIDIGDLVYKPPRNGPTLWEIGIPDRYAAEFYVPDPDPKYINKLYVNHTDRYRQYGLWERYAELYPNEDLIYIVNQGDYRKDWFFAQV TRKKDNQTYEGTTWQIKFELDNVNESAVYKLRLALASAHVSVLQVRINDPSTEPPLFSTGQIGKENTIARHGIYGLYWLFNVDVPGALFVKGNNNTIYLT QA |
Full Sequence |
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Protein Sequence Length: 636 Download |
MVSGVQLQVQ DKHVVMDNGI LQVTLSNPEG IVTGIQFQGI DNLLEVRNAE YNRGYWDLVW 60 SKPGKKATNF TVIVENEEQV EVSFTRLWNS SLEGQVVPLN IDKRFIMLHG SSGFYTYAIF 120 EHLGEWPAFN IDNIRMAFKL NKDKFHFMSI ADNRQRLMPL PDDRLPGRGQ VLAYPEAVLL 180 VNPVEPEFKG EVDDKYLYSC KSQDIRVHGW ICADPPVGFW QITPSIESRS AGPLKQYLAS 240 HVGPTSLALF HSVHYSGADL ILRFGHSEPW KKVFGPIFIY LNSLSNEDDP LLLWEDAKQQ 300 MIFEVQSWPY DFPASKDFPQ SDQRGTLHGR LLVEDRYINM DYIAANGAYV GLAPPGNAGS 360 WQRECKGYQF WARANADGYF YIDHIRTGNY SLYAFVPGFI GDYKYDFNIT IIEGSYIDIG 420 DLVYKPPRNG PTLWEIGIPD RYAAEFYVPD PDPKYINKLY VNHTDRYRQY GLWERYAELY 480 PNEDLIYIVN QGDYRKDWFF AQVTRKKDNQ TYEGTTWQIK FELDNVNESA VYKLRLALAS 540 AHVSVLQVRI NDPSTEPPLF STGQIGKENT IARHGIYGLY WLFNVDVPGA LFVKGNNNTI 600 YLTQALSGSP FRGVMYDYIR LEGPPLPPCN SSNNT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-29 | 323 | 422 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-46 | 434 | 622 | 191 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 6.0e-64 | 7 | 289 | 296 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-96 | 6 | 192 | 194 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 4 | 634 | 5 | 654 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 16 | 634 | 1 | 625 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301114.1 | 0 | 5 | 627 | 6 | 634 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 2 | 630 | 3 | 639 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 4 | 625 | 5 | 635 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY685354 | 289 | 345 | 631 | 0 |
DW479599 | 291 | 4 | 284 | 0 |
DW479600 | 293 | 4 | 286 | 0 |
CD574727 | 217 | 419 | 635 | 0 |
DT552229 | 293 | 16 | 297 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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