Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10003286m |
Family | GH28 |
Protein Properties | Length: 477 Molecular Weight: 52154.8 Isoelectric Point: 8.5519 |
Chromosome | Chromosome/Scaffold: 5 Start: 17805801 End: 17809117 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 112 | 455 | 0 |
DKGGAQLNVPEGLWLTGSFNLTSNFTLFLEKGAVILGSQDMDEWPIIDPLPSYGRGRERLGGRHISLIHGDHLTNVIITGYNGTIDGQGQMWWDLWWNRT LKHTRGHLVELMNSNNILISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVAVKSGWDHYGIAMARPSSN IVVRRVSGTTPTCSGVGIGSEMSGGIFNVTVDQLHVWDAAAGVRIKTDKGRGGYIENITIRNIKMERVKIPIRISRGSNDHPDEGWDPKALPKIRGISFV NVVSENTTKAPVLAGIIGTQFEEICMKNVSLLGLAPSAKWQCQF |
Full Sequence |
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Protein Sequence Length: 477 Download |
MQKEKAMKSE KLKGNFSRPS WATLVLIVTL ITILSLQITK KSVLSPKRVG FSGADGAIFD 60 PDSCAAGLLG DQYLPERKVV MSIKDFGGVG DGTTSNTEAF RKAVRYMQGF GDKGGAQLNV 120 PEGLWLTGSF NLTSNFTLFL EKGAVILGSQ DMDEWPIIDP LPSYGRGRER LGGRHISLIH 180 GDHLTNVIIT GYNGTIDGQG QMWWDLWWNR TLKHTRGHLV ELMNSNNILI SNLTFRNSPF 240 WTIHPVYCRN VVIKGMTILA PLNAPNTDGI DPDSSTNVCI EDCYIESGDD LVAVKSGWDH 300 YGIAMARPSS NIVVRRVSGT TPTCSGVGIG SEMSGGIFNV TVDQLHVWDA AAGVRIKTDK 360 GRGGYIENIT IRNIKMERVK IPIRISRGSN DHPDEGWDPK ALPKIRGISF VNVVSENTTK 420 APVLAGIIGT QFEEICMKNV SLLGLAPSAK WQCQFVSGFT SQVFPLPCPQ LQNKSSS 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-21 | 81 | 413 | 352 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 9.0e-25 | 81 | 390 | 330 | + Probable polygalacturonase At3g15720 | ||
PLN02793 | PLN02793 | 1.0e-27 | 75 | 468 | 417 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-31 | 179 | 456 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-54 | 80 | 400 | 345 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76963.1 | 0 | 14 | 477 | 2 | 462 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37530.1 | 0 | 1 | 477 | 1 | 473 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274138.1 | 0 | 1 | 477 | 1 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310517.1 | 0 | 48 | 477 | 2 | 431 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526639.1 | 0 | 50 | 477 | 53 | 474 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2e-40 | 74 | 444 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2e-40 | 74 | 444 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2e-40 | 74 | 444 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2e-40 | 74 | 444 | 23 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-26 | 124 | 457 | 51 | 373 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |