Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10003328m |
Family | GT8 |
Protein Properties | Length: 639 Molecular Weight: 73981.4 Isoelectric Point: 6.6995 |
Chromosome | Chromosome/Scaffold: 5 Start: 38374951 End: 38378462 |
Description | plant glycogenin-like starch initiation protein 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT8 | 297 | 518 | 9.69979e-42 |
NFYSERARREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDETISDYHRGGLEAAGWKIHTIQRIRNPKAERDAYNEWNYSKFRLWQLTDYDKI IFIDADLLILRNIDFLFEMPEITATGNNATLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKHMKI RLFGADPPILYVLHYLGNKPWL |
Full Sequence |
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Protein Sequence Length: 639 Download |
MRGPATSPTE ARHRLSSSNE ETSKRRFPRN KYFKDVEKAL HVPIQCRNFN FRISTLQVVL 60 VIILLGSFLT LFRSPAVHIA DHPSNSASQW VRESASRDPQ YLSTLDIDWD QISNVVEKLT 120 GRNEFQGIGL LNFNDSEVDH WKQLIPDAEH VVLNLDHVSN DITWESLYPE WIDEEEEFEV 180 PTCPSLPKLQ VPGKPRIDLV AVKLPCIKLG RWSRDVACLH LQLEAARIAS SSKGLHPVHV 240 LLVTECFPIP NLFTCKDIVV REGNAWLYKP DLHRLREKLL LPVGSCELAV PLKAKENFYS 300 ERARREAYAT ILHSAHVYVC GAIAAAQSIR MAGSTRDLVI LVDETISDYH RGGLEAAGWK 360 IHTIQRIRNP KAERDAYNEW NYSKFRLWQL TDYDKIIFID ADLLILRNID FLFEMPEITA 420 TGNNATLFNS GVMVVEPSNC TFQLLMDHIY EIESYNGGDQ GYLNEIFTWW HRIPKHMNFL 480 KHFWEGDEEE KKHMKIRLFG ADPPILYVLH YLGNKPWLCF RDYDCNWNVD ILQEFASDIA 540 HKTWWKVHDA MPEHLQKFCL LRSKQKAALE WDRRQAEKAN YTDGHWKIKI QDKRLKTCFE 600 DFCFWESMLW HWGEKNWTDN STASTPPPPA ITSASLSS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd00505 | Glyco_transf_8 | 5.0e-10 | 380 | 517 | 170 | + Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+. | ||
PLN00176 | PLN00176 | 5.0e-15 | 287 | 517 | 277 | + galactinol synthase | ||
cd06914 | GT8_GNT1 | 4.0e-16 | 318 | 468 | 161 | + GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases. | ||
pfam01501 | Glyco_transf_8 | 1.0e-37 | 309 | 519 | 255 | + Glycosyl transferase family 8. This family includes enzymes that transfer sugar residues to donor molecules. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. This family includes Lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, and glycogenin glucosyltransferase. | ||
cd02537 | GT8_Glycogenin | 6.0e-69 | 306 | 551 | 256 | + Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. |
Gene Ontology | |
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GO Term | Description |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33316.1 | 0 | 1 | 638 | 1 | 648 | secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] |
RefSeq | XP_002275240.1 | 0 | 3 | 638 | 2 | 636 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278157.1 | 0 | 9 | 620 | 236 | 851 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307480.1 | 0 | 15 | 638 | 2 | 628 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526157.1 | 0 | 10 | 638 | 17 | 655 | glycogenin, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u2t_A | 4e-23 | 294 | 517 | 14 | 242 | A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese |
PDB | 1zcv_A | 2e-21 | 306 | 517 | 24 | 240 | A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn |
PDB | 3u2x_B | 2e-21 | 306 | 517 | 5 | 221 | A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn |
PDB | 3u2x_A | 2e-21 | 306 | 517 | 5 | 221 | A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn |
PDB | 3u2v_B | 2e-21 | 306 | 517 | 5 | 221 | A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn |