Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10003466m |
Family | PL4 |
Protein Properties | Length: 631 Molecular Weight: 72201.6 Isoelectric Point: 6.4628 |
Chromosome | Chromosome/Scaffold: 5 Start: 35313613 End: 35319775 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 22 | 613 | 0 |
TQAVRLHIKDHHVVLDNGILQVTLSKPGGIVTGIRYNGIDNLLEFRNKETNRGYWDLMWNPPGGKGMFDVISGTSFRVVVENEEQVELSFLRTWASSLEG NYIPLNIDKRFIMLRGSSGFYSYAIYEHLKEWPAFTLGQTRFTFKLRKEKFRYMVIADNRHRQMPFLRTCQQEEVDDKYQYSCENKDLKVHGWICRTPPV GFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASED FQKSEERGCVSGRLLVQDRYISNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNI KMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTW QIKFKLDHVDRNSSYKLRVAIAAATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSP |
Full Sequence |
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Protein Sequence Length: 631 Download |
MDPGSHGGDQ VLQNSTWPAM PTQAVRLHIK DHHVVLDNGI LQVTLSKPGG IVTGIRYNGI 60 DNLLEFRNKE TNRGYWDLMW NPPGGKGMFD VISGTSFRVV VENEEQVELS FLRTWASSLE 120 GNYIPLNIDK RFIMLRGSSG FYSYAIYEHL KEWPAFTLGQ TRFTFKLRKE KFRYMVIADN 180 RHRQMPFLRT CQQEEVDDKY QYSCENKDLK VHGWICRTPP VGFWLIIPSD EFRSGGPLKQ 240 NLTSHVGPTT LAVFLSGHYA GKYMETHIGQ DEPWKKVFGP VFIYLNSAAD GDDPLWLWED 300 AKIKMMSEVQ SWPYNFPASE DFQKSEERGC VSGRLLVQDR YISNDVISAN GAYVGLAPPG 360 DVGSWQTECK DYQFWTTADE DGCFSIKNIR TGNYNLYAWV PGFVGDYRSD ALVTITSGSN 420 IKMGDLVYEP PRDGPTLWEI GIPDRSAREF NVPDPDPKYV NRLFVNHPDR FRQYGLWSRY 480 TELYPNEDLV YTIGVSDYSK DWFFAQVVRE MDNKTYQGTT WQIKFKLDHV DRNSSYKLRV 540 AIAAATLAEL QVRVNDPNAN RPLFTTGLIG RDNAIARHGI HGLYLLYHVN IPGTRFIEGE 600 NTIFLKQPRC TSPFQGIMYD YIRLEGPPVS * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0008 | 376 | 420 | 45 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 2.0e-34 | 327 | 426 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 6.0e-53 | 438 | 625 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 9.0e-73 | 33 | 288 | 274 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-84 | 13 | 187 | 175 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 20 | 628 | 1 | 645 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172462.2 | 0 | 4 | 628 | 28 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002306520.1 | 0 | 36 | 628 | 1 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 20 | 627 | 1 | 631 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 20 | 630 | 1 | 636 | lyase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3njx_A | 0.009 | 373 | 606 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus Mutant H210a |
PDB | 1nkg_A | 0.01 | 373 | 606 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 3njv_A | 0.01 | 373 | 606 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus |
PDB | 2xhn_B | 0.01 | 373 | 606 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
PDB | 2xhn_A | 0.01 | 373 | 606 | 283 | 484 | A Chain A, Rhamnogalacturonan Lyase From Aspergillus Aculeatus K150a Active Site Mutant |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY792839 | 254 | 270 | 522 | 0 |
EY842989 | 242 | 195 | 435 | 0 |
CX674004 | 225 | 407 | 631 | 0 |
EY731293 | 266 | 113 | 355 | 0 |
EY842989 | 44 | 422 | 464 | 0.00001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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