Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10003556m |
Family | AA7 |
Protein Properties | Length: 531 Molecular Weight: 59903.5 Isoelectric Point: 5.7774 |
Chromosome | Chromosome/Scaffold: 5 Start: 5178903 End: 5180767 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 66 | 297 | 0 |
FSTPENPKPLFIITPFHVSEIQAAIKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFSEISVDVEERTAWVESGATVGQLNYRIAEKSQNLLAV PVGTCPTVGVGGHFSGGGIGALMRKYGTAADHIVDAHMIDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVSVPSTVTVFAVPRTLEQNATKL LNKWQYIEDRVHEDLFIIAILFRENSTMVSLF |
Full Sequence |
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Protein Sequence Length: 531 Download |
MFCPNILSFI SSLLLLFHGV ALAAENHEKF LKCLSLQSDT ISEVLYTQNN SSFSSVLKAS 60 IQNLVFSTPE NPKPLFIITP FHVSEIQAAI KCSKKNGLQI RVRSGGHDHE GLSSISDVPF 120 IIIDLINFSE ISVDVEERTA WVESGATVGQ LNYRIAEKSQ NLLAVPVGTC PTVGVGGHFS 180 GGGIGALMRK YGTAADHIVD AHMIDVKGRF LNRESMGEDL FWAIRGGGGA SFGIIVSWKI 240 NLVSVPSTVT VFAVPRTLEQ NATKLLNKWQ YIEDRVHEDL FIIAILFREN STMVSLFTSL 300 FLGGVDRLLR LMQDSFPELG LTKEDCREMT FVESIVYLDG FEAIRESINV DVLLGRNFFR 360 PFTGKIDYLT EPIPEEAFLG IYDIFFEQDQ KTNGRLVFFP YGGKITEISE SEIPYPHRAG 420 NIYTLLYYAE WGQEAIDEAH QTHVNMLKQL FNYMTPYVTK NPRTAYINYR DLDIGRNNKF 480 GPTSVQEAGV WGKKYFKNNF YRLVHVKTMV DPENFFRNEQ SIPPFNLVKD E 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 8.0e-16 | 74 | 343 | 282 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 7.0e-17 | 465 | 523 | 59 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 2.0e-19 | 74 | 212 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002300557.1 | 0 | 23 | 525 | 24 | 528 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330609.1 | 0 | 23 | 526 | 24 | 532 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332196.1 | 0 | 23 | 526 | 17 | 525 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333020.1 | 0 | 5 | 526 | 7 | 531 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334045.1 | 0 | 23 | 526 | 24 | 529 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 24 | 525 | 1 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_B | 0 | 28 | 525 | 9 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_A | 0 | 28 | 525 | 9 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsh_A | 0 | 28 | 525 | 9 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
PDB | 4dns_B | 0 | 23 | 525 | 6 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |