Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10003567m |
Family | PL4 |
Protein Properties | Length: 625 Molecular Weight: 71345.5 Isoelectric Point: 10.3459 |
Chromosome | Chromosome/Scaffold: 5 Start: 35342712 End: 35347144 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 18 | 602 | 0 |
VSAAGVQLHEQNNHVVMDNGILQVSISTPQGFVIGIQYKGIKNLLNVQNEEDNRGIEATNYKVIMRTKEQVELSFTRMWHPSTNGTIAPVNIDKRFLMLR GSSGFYSYAIYKRLKGWPGFQLFNNRMVFKPNPDKFHYMIISGNRQREMPLQQDRERGHKLAYEEAVLLPNGEVDDKYQYSMDAKDIRVHGWISTDSTVG FWQILPSSESRSFGPLKQFLTSHTGPISINTFHSTHYVGENFGMNFKDGEAWKKIFGPFFVYVNSVPGKGDRQMLWRDANRQFMNEVKSWPYKFPASKDF ARSNKRGSISGRLIVKDRYVSRAGIAAKGAYVGLAKPGRAGSWQTECKGYQFWTVANEGGNFSIKNVLIGNYNLYAWIPGFIGDFKYHAAIRITAGSAKQ IGNLVYKAPRNGPTLWEIGIPDRSAAEFYIPNPNPKYINKLYVKHDRFRQYGLWERYAELHRKRDLVYEVWANNYRKDWYFAQNTRKKGNKYEGSTWQIQ FKLEGVVKKATYKLRVAVAAAHGAELQVRVNSRSARRPLFSSGSVGRENAIARHGIHGVYKLFNVDVPGKVLRKGNNTIYLSQPR |
Full Sequence |
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Protein Sequence Length: 625 Download |
MSSLLLLLFL VQCLGLSVSA AGVQLHEQNN HVVMDNGILQ VSISTPQGFV IGIQYKGIKN 60 LLNVQNEEDN RGIEATNYKV IMRTKEQVEL SFTRMWHPST NGTIAPVNID KRFLMLRGSS 120 GFYSYAIYKR LKGWPGFQLF NNRMVFKPNP DKFHYMIISG NRQREMPLQQ DRERGHKLAY 180 EEAVLLPNGE VDDKYQYSMD AKDIRVHGWI STDSTVGFWQ ILPSSESRSF GPLKQFLTSH 240 TGPISINTFH STHYVGENFG MNFKDGEAWK KIFGPFFVYV NSVPGKGDRQ MLWRDANRQF 300 MNEVKSWPYK FPASKDFARS NKRGSISGRL IVKDRYVSRA GIAAKGAYVG LAKPGRAGSW 360 QTECKGYQFW TVANEGGNFS IKNVLIGNYN LYAWIPGFIG DFKYHAAIRI TAGSAKQIGN 420 LVYKAPRNGP TLWEIGIPDR SAAEFYIPNP NPKYINKLYV KHDRFRQYGL WERYAELHRK 480 RDLVYEVWAN NYRKDWYFAQ NTRKKGNKYE GSTWQIQFKL EGVVKKATYK LRVAVAAAHG 540 AELQVRVNSR SARRPLFSSG SVGRENAIAR HGIHGVYKLF NVDVPGKVLR KGNNTIYLSQ 600 PRKLDAFTGI MYDYLRFEGP DPNS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.005 | 325 | 418 | 94 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 8.0e-29 | 322 | 421 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 8.0e-44 | 433 | 618 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-57 | 25 | 288 | 288 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 8.0e-64 | 19 | 188 | 189 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 18 | 624 | 1 | 649 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002301113.1 | 0 | 15 | 622 | 42 | 678 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 22 | 620 | 5 | 633 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 0 | 27 | 620 | 123 | 746 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 5e-29 | 73 | 188 | 1 | 118 | lyase, putative [Ricinus communis] |