CAZyme Information

Basic Information
SpeciesCitrus clementina
Cazyme IDCiclev10003729m
FamilyGH18
Protein PropertiesLength: 273 Molecular Weight: 30545.5 Isoelectric Point: 5.6476
ChromosomeChromosome/Scaffold: 5 Start: 18210154 End: 18211205
Description
View CDS
External Links
CAZyDB
Signature Domain  Download full data set without filtering
FamilyStartEndEvalue
GH18261841.8e-21
  FILSFAIDVDPSGNYQNGKFSPYWAETLTPDSVAAVKARHPNVKALASLSGWSLGSKVLHWYNPRNPQIWISNAFSSLKSIIQEYHLDGIDIDYEKFPMR
  NASTPSFAYCIGELITQLKNQSIISVATIAPFYSTALPYIKLYKDYGHVVDYVNYQFYT
Full Sequence
Protein Sequence     Length: 273     Download
MECIGATGIP VKFDSVPIKD GIDFHFILSF AIDVDPSGNY QNGKFSPYWA ETLTPDSVAA    60
VKARHPNVKA LASLSGWSLG SKVLHWYNPR NPQIWISNAF SSLKSIIQEY HLDGIDIDYE    120
KFPMRNASTP SFAYCIGELI TQLKNQSIIS VATIAPFYST ALPYIKLYKD YGHVVDYVNY    180
QFYTDKVRSP RGYLEAFKLR VEQFGREKMV PSYEVNGRGI QGQAFFDALR LLQANGFEVN    240
GVMIFSADAS ASNNYLYESE SQDFLLNSTD VA* 
Functional Domains Download unfiltered results here
Cdd IDDomainE-ValueStartEndLengthDomain Description
cd02871GH18_chitinase_D-like1.0e-595183107+
smart00636Glyco_186.0e-825184176+
pfam00704Glyco_hydro_189.0e-1025183165+
cd00598GH18_chitinase-like7.0e-1125183161+
cd06544GH18_narbonin6.0e-871250256+
Gene Ontology
GO TermDescription
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process
Annotations - NR Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
DDBJBAI22848.10226697359chitinase A [Equisetum arvense]
EMBLCAN65355.101271144411hypothetical protein [Vitis vinifera]
RefSeqXP_002274616.10127168335PREDICTED: hypothetical protein [Vitis vinifera]
RefSeqXP_002328469.1012711268predicted protein [Populus trichocarpa]
RefSeqXP_002517257.1012692267Chitinase 1 precursor, putative [Ricinus communis]
Annotations - PDB Download unfiltered results here
SourceHit IDE-ValueQuery StartQuery EndHit StartHit EndDescription
PDB3sim_B01126715275A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB3sim_A01126715275A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus
PDB1nar_A2e-242025129267A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution
PDB2ybu_F0.0012517736195A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution
PDB2ybu_E0.0012517736195A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution
Hydropathy
EST Download unfiltered results here
HitLengthStartEndEValue
DY83128626712630
JG18611918911880
CO366234263112630
CO16532327522650
EX33379327242650
Orthologous Group
SpeciesID
Aquilegia coeruleaAquca_046_00008.1Aquca_014_00353.1Aquca_010_00636.1Aquca_027_00184.1
Brachypodium distachyonBradi3g26850.1Bradi3g26810.1Bradi3g26840.1
Carica papayaevm.model.supercontig_139.6
Citrus clementinaCiclev10028881m
Citrus sinensisorange1.1g021511morange1.1g046094m
Eucalyptus grandisEucgr.B02439.1Eucgr.J02106.1
Fragaria vescamrna14033.1-v1.0-hybrid.59.211mrna14019.1-v1.0-hybridmrna15882.1-v1.0-hybridmrna14034.1-v1.0-hybridmrna17899.1-v1.0-hybrid
mrna22564.1-v1.0-hybrid
Glycine maxGlyma11g15512.1Glyma09g21615.1Glyma13g40590.1
Gossypium raimondiiGorai.003G135700.1Gorai.003G135800.1Gorai.003G134100.1Gorai.003G129600.1Gorai.011G120000.1
Gorai.003G138400.1
Linum usitatissimumLus10005172
Malus domesticaMDP0000904158MDP0000885802MDP0000644797MDP0000312089
Manihot esculentacassava4.1_024209mcassava4.1_027074m
Medicago truncatulaMedtr6g079630.1Medtr2g096030.1
Mimulus guttatusmgv1a019267mmgv1a024804m
Oryza sativaLOC_Os10g28050.1LOC_Os10g28080.1
Panicum virgatumPavirv00061810mPavirv00014582mPavirv00031712m
Phaseolus vulgarisPhvul.011G069900.1
Picea abiesMA_38396g0010MA_10427109g0010
Populus trichocarpaPotri.012G102400.1Potri.015G100500.1Potri.015G100600.1Potri.001G341700.1
Prunus persicappa023801mppa009038mppa009096m
Ricinus communis30039.m00023530039.m000234
Setaria italicaSi022612mSi026720mSi028172mSi036765mSi036774m
Selaginella moellendorffii41118115493
Sorghum bicolorSb01g021920.1
Sequence Alignments  (This image is cropped. Click for full image.)
Phylogeny