Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10003837m |
Family | CE8 |
Protein Properties | Length: 355 Molecular Weight: 38948.6 Isoelectric Point: 7.9102 |
Chromosome | Chromosome/Scaffold: 5 Start: 34133490 End: 34136917 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 42 | 344 | 0 |
VTVDQSSSQYRTVQSAIDSIPAENSQWIKIHIKAGTYKEKIKIQRNKPCILLEGEGSGVTKITYDDHQSTDTSATFSSFADNVVAKGITFENSYNLAVEI LAELDRRGRDLGTLQAGNDITQALAARIYGDKSAFYDCRFLGVQDTLWDVQGRHFFKSCYIEGAIDFIFGNGQSVYEDCSVNSTAGLLIGGRGSGYITAQ SRGSANDPGGFVFRGGEVTGTGQAYLGRAYGPYSRVIFYNAWLSSVVTPPGWNAWNLQGQEGNFMYAEVNCKGPGSDTSNRVSWEKKIDPKLLYKYSTSY FIN |
Full Sequence |
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Protein Sequence Length: 355 Download |
HEPALDVAKK CGILCSRCLK LFSGKIRRAD QDCKGSNVAY TVTVDQSSSQ YRTVQSAIDS 60 IPAENSQWIK IHIKAGTYKE KIKIQRNKPC ILLEGEGSGV TKITYDDHQS TDTSATFSSF 120 ADNVVAKGIT FENSYNLAVE ILAELDRRGR DLGTLQAGND ITQALAARIY GDKSAFYDCR 180 FLGVQDTLWD VQGRHFFKSC YIEGAIDFIF GNGQSVYEDC SVNSTAGLLI GGRGSGYITA 240 QSRGSANDPG GFVFRGGEVT GTGQAYLGRA YGPYSRVIFY NAWLSSVVTP PGWNAWNLQG 300 QEGNFMYAEV NCKGPGSDTS NRVSWEKKID PKLLYKYSTS YFINQDGWIS KQPQ* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 2.0e-75 | 38 | 349 | 324 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 4.0e-79 | 39 | 349 | 312 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 4.0e-80 | 41 | 349 | 311 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 3.0e-96 | 18 | 353 | 337 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-117 | 39 | 353 | 316 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002318946.1 | 0 | 32 | 353 | 26 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 32 | 353 | 25 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515259.1 | 0 | 36 | 354 | 32 | 340 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002515259.1 | 0 | 38 | 353 | 360 | 660 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 33 | 353 | 29 | 337 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 7e-38 | 35 | 326 | 6 | 282 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-32 | 38 | 349 | 2 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 5e-18 | 38 | 272 | 2 | 240 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-18 | 38 | 272 | 2 | 240 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 5e-18 | 38 | 272 | 2 | 240 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV984237 | 305 | 51 | 351 | 0 |
JG234805 | 186 | 170 | 353 | 0 |
JG231651 | 186 | 170 | 353 | 0 |
EX315894 | 291 | 65 | 351 | 0 |
EX317112 | 290 | 66 | 351 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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