| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10004013m |
| Family | AA7 |
| Protein Properties | Length: 231 Molecular Weight: 25018.9 Isoelectric Point: 7.6013 |
| Chromosome | Chromosome/Scaffold: 5 Start: 5137962 End: 5140452 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 7 | 227 | 0 |
| NLIFSTPTNPKPVFVITPFHVSEIQAAVKCSKKNGLQIRVRSGGHDHEGLSSISDVPFIIIDLINFIEISVDVEEKTAWVESGATIGQLNYRIAEKSQNL LTFPVGTCPGVGVGGHFSGGGYGVLLRKYGMAADHIVDAHMVDVKGRFLNRESMGEDLFWAIRGGGGASFGIIVSWKINLVAVPPTVTVFNVPRTLEQNA TKLLFKWQCIADKVDEDLFIS | |||
| Full Sequence |
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| Protein Sequence Length: 231 Download |
| LKASIKNLIF STPTNPKPVF VITPFHVSEI QAAVKCSKKN GLQIRVRSGG HDHEGLSSIS 60 DVPFIIIDLI NFIEISVDVE EKTAWVESGA TIGQLNYRIA EKSQNLLTFP VGTCPGVGVG 120 GHFSGGGYGV LLRKYGMAAD HIVDAHMVDV KGRFLNRESM GEDLFWAIRG GGGASFGIIV 180 SWKINLVAVP PTVTVFNVPR TLEQNATKLL FKWQCIADKV DEDLFISPLL * 240 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| COG0277 | GlcD | 5.0e-14 | 18 | 213 | 203 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] |
| pfam01565 | FAD_binding_4 | 4.0e-17 | 18 | 156 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002267904.1 | 0 | 1 | 230 | 62 | 290 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002330562.1 | 0 | 1 | 226 | 60 | 286 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330564.1 | 0 | 1 | 226 | 60 | 286 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330565.1 | 0 | 1 | 226 | 60 | 286 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002332196.1 | 0 | 1 | 230 | 52 | 280 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 1 | 226 | 37 | 262 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 3 | 226 | 40 | 264 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 3 | 226 | 40 | 264 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 1 | 226 | 36 | 262 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 1 | 226 | 36 | 262 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CX665622 | 230 | 1 | 230 | 0 |
| FC911731 | 230 | 1 | 230 | 0 |
| DY279314 | 230 | 1 | 230 | 0 |
| CX292181 | 213 | 18 | 230 | 0 |
| CX309192 | 209 | 5 | 213 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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