Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10004864m |
Family | GH28 |
Protein Properties | Length: 482 Molecular Weight: 52870.4 Isoelectric Point: 7.6516 |
Chromosome | Chromosome/Scaffold: 9 Start: 29500559 End: 29503424 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 87 | 436 | 0 |
AADGGAQLIVPPGKWLTGSFNLTSHFTLYIHKDALLLASQDESEWPLLPPLPSYGRGRDEPGGRFSSLIFGTNLTDVVVTGGNATINGQGEPWWIKYRKK QFNVTRPYLIEVMFSDNVQISNLTLIDSPSWNVHPVYSSNVLIQGLTIRAPIDSPNTDGINPDSCTNTRIEDNYIVSGDDCVAVKSGWDEYGIKVGMPTQ HLIIRRLICISPDSAAIALGSEMSGGIKDVRAEDITAINTQSGVRIKTAVGRGAYVKEIYVRRMTMKTMKYVFWMTGDYGSHPDPGFDPKALPTVTGINY RDMVADNVTQSAKLDGIRNDPFTGICISNVTIKLTEKPKELQWNCTNIQG |
Full Sequence |
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Protein Sequence Length: 482 Download |
MEFCLKSRNN ILHPHVIKIL STLLTLGLLS PQVAECRPTK NSYTIEFQAL NCRKHSAVLT 60 DFGGVGDGKT SNTKAFNTAI SNLSKYAADG GAQLIVPPGK WLTGSFNLTS HFTLYIHKDA 120 LLLASQDESE WPLLPPLPSY GRGRDEPGGR FSSLIFGTNL TDVVVTGGNA TINGQGEPWW 180 IKYRKKQFNV TRPYLIEVMF SDNVQISNLT LIDSPSWNVH PVYSSNVLIQ GLTIRAPIDS 240 PNTDGINPDS CTNTRIEDNY IVSGDDCVAV KSGWDEYGIK VGMPTQHLII RRLICISPDS 300 AAIALGSEMS GGIKDVRAED ITAINTQSGV RIKTAVGRGA YVKEIYVRRM TMKTMKYVFW 360 MTGDYGSHPD PGFDPKALPT VTGINYRDMV ADNVTQSAKL DGIRNDPFTG ICISNVTIKL 420 TEKPKELQWN CTNIQGITSR VTPQACELLP KKEPTDCFFP DDKLPIDDVR LNTCSASISK 480 A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-17 | 58 | 446 | 405 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-24 | 59 | 443 | 405 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-24 | 59 | 419 | 371 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-31 | 155 | 434 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-52 | 57 | 353 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17976.1 | 0 | 1 | 475 | 1 | 470 | unknown [Glycine max] |
RefSeq | XP_002273143.1 | 0 | 23 | 480 | 5 | 462 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273669.1 | 0 | 1 | 480 | 1 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 19 | 477 | 1 | 451 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 15 | 477 | 11 | 472 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 8.96831e-44 | 59 | 419 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 8.96831e-44 | 59 | 419 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 8.96831e-44 | 59 | 419 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 8.96831e-44 | 59 | 419 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.00000000000004 | 59 | 395 | 159 | 528 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |