| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10004869m |
| Family | GH28 |
| Protein Properties | Length: 481 Molecular Weight: 53249 Isoelectric Point: 6.1459 |
| Chromosome | Chromosome/Scaffold: 9 Start: 25658750 End: 25661504 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 81 | 399 | 0 |
| RFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLV GFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKL GSASWFDFKALVFDNITIVESHRGLGFQIRDGGNVSDVTFSNINISTRYYDPSWWGRAEPIYVTTCPRDTKTKEGTISNLLFVNITAKSENGVFLSGSKH GLLKNLSFINMNVTYKRWT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 481 Download |
| MVTYLSRFTI TIIGLLVIIQ STPSTSSPNN SVQLLLLSTT HIHIHSVIDF GAKGDGIHYD 60 TAAIQSAIDA CPPGNKPCEV RFPPGEYLTA TIRLKSHVTL NIHEDATLLG GPRIEDYPEE 120 SSRWYVVLAE NATDVGITGG GVVDGQAMKF VVTKNEIKNV MVSWNHTGAC SGDECRPRLV 180 GFLGCRNVNV WNVRLREPAY WCLHIVRCDN TFIRDMSIYG DFNTPNNDGI DIEDSNNTVI 240 TRVQIDTGDD AICPKTYTGP LYNLTATDSW IRTKSSAIKL GSASWFDFKA LVFDNITIVE 300 SHRGLGFQIR DGGNVSDVTF SNINISTRYY DPSWWGRAEP IYVTTCPRDT KTKEGTISNL 360 LFVNITAKSE NGVFLSGSKH GLLKNLSFIN MNVTYKRWTN YMGGLVDYRP GCQGLVNHSS 420 AGIIMEHIEG LEVKNVNMKW HGDQSSSWSN PLDFRPWTVN DISLLNFHSD FDNSDGNVAS 480 * |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 5.0e-7 | 163 | 252 | 92 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam12708 | Pectate_lyase_3 | 2.0e-8 | 47 | 100 | 55 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| PLN02218 | PLN02218 | 6.0e-9 | 47 | 379 | 351 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-9 | 152 | 395 | 272 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 6.0e-44 | 47 | 323 | 313 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 46 | 469 | 36 | 468 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 46 | 469 | 36 | 468 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 8 | 473 | 6 | 468 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 8 | 473 | 6 | 463 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 46 | 469 | 14 | 439 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 2e-18 | 43 | 322 | 155 | 484 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 2uvf_A | 2e-18 | 43 | 322 | 155 | 484 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
| PDB | 2uve_B | 2e-18 | 43 | 322 | 155 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 2e-18 | 43 | 322 | 155 | 484 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 8e-17 | 46 | 322 | 29 | 316 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
