Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10004921m |
Family | GT47 |
Protein Properties | Length: 467 Molecular Weight: 53589.3 Isoelectric Point: 9.4746 |
Chromosome | Chromosome/Scaffold: 9 Start: 30524880 End: 30526299 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 71 | 396 | 0 |
PFSVYIYDMPSEFNLGLVKNCHHLNMHRDMCPHVANHGLGQPLQHVNAVSPACWFATNQFTAAMIFHARLENHPLRTWDPSRATLFYVPFYGGLHASSKF RETNLTARDELAVRFSEFLESQPWWQRNNGKDHFVVLGRTAWDFMRTKSGPDYGASTLLNLPRVQNLSVLAIERNPWRTNQHGIPYPSYFHPCTSSQVLT WQHSMRLSKRPHLFSFVGAPRKGSQRAAIRYELIKQCGESIRCKLLTCRYGSGASNKCSSPSEILGVMSKSQFCLQAPGDSFTRRSTFDSVLAGCIPVFF SRHTAYTQYMWYLPQDAEEYSVYING |
Full Sequence |
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Protein Sequence Length: 467 Download |
MLSKKQTQLP IFITSNSPFK SSLFFIIIFL TAWFLLLFFW LPPTNPIHIN LHRAYHLISN 60 HIINSHVYRQ PFSVYIYDMP SEFNLGLVKN CHHLNMHRDM CPHVANHGLG QPLQHVNAVS 120 PACWFATNQF TAAMIFHARL ENHPLRTWDP SRATLFYVPF YGGLHASSKF RETNLTARDE 180 LAVRFSEFLE SQPWWQRNNG KDHFVVLGRT AWDFMRTKSG PDYGASTLLN LPRVQNLSVL 240 AIERNPWRTN QHGIPYPSYF HPCTSSQVLT WQHSMRLSKR PHLFSFVGAP RKGSQRAAIR 300 YELIKQCGES IRCKLLTCRY GSGASNKCSS PSEILGVMSK SQFCLQAPGD SFTRRSTFDS 360 VLAGCIPVFF SRHTAYTQYM WYLPQDAEEY SVYINGENGN ATRRIEDELM KIPRERVERM 420 RKKVIDLIPR VTYKHPNASD DGEFEDAVDV AVAALANHVQ SVLSKE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 3.0e-57 | 71 | 394 | 340 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC42883.1 | 0 | 72 | 461 | 71 | 449 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_177014.1 | 0 | 72 | 461 | 71 | 449 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002270383.1 | 0 | 74 | 463 | 125 | 503 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300452.1 | 0 | 72 | 455 | 5 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336132.1 | 0 | 72 | 455 | 26 | 412 | predicted protein [Populus trichocarpa] |