| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10005155m |
| Family | GH28 |
| Protein Properties | Length: 384 Molecular Weight: 42283.3 Isoelectric Point: 6.1162 |
| Chromosome | Chromosome/Scaffold: 9 Start: 25658750 End: 25661504 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 81 | 318 | 2.8026e-45 |
| RFPPGEYLTATIRLKSHVTLNIHEDATLLGGPRIEDYPEESSRWYVVLAENATDVGITGGGVVDGQAMKFVVTKNEIKNVMVSWNHTGACSGDECRPRLV GFLGCRNVNVWNVRLREPAYWCLHIVRCDNTFIRDMSIYGDFNTPNNDGIDIEDSNNTVITRVQIDTGDDAICPKTYTGPLYNLTATDSWIRTKSSAIKL GSASWFDFKALVFDNITIVESHRGLGFQIRDGGNISYI | |||
| Full Sequence |
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| Protein Sequence Length: 384 Download |
| MVTYLSRFTI TIIGLLVIIQ STPSTSSPNN SVQLLLLSTT HIHIHSVIDF GAKGDGIHYD 60 TAAIQSAIDA CPPGNKPCEV RFPPGEYLTA TIRLKSHVTL NIHEDATLLG GPRIEDYPEE 120 SSRWYVVLAE NATDVGITGG GVVDGQAMKF VVTKNEIKNV MVSWNHTGAC SGDECRPRLV 180 GFLGCRNVNV WNVRLREPAY WCLHIVRCDN TFIRDMSIYG DFNTPNNDGI DIEDSNNTVI 240 TRVQIDTGDD AICPKTYTGP LYNLTATDSW IRTKSSAIKL GSASWFDFKA LVFDNITIVE 300 SHRGLGFQIR DGGNISYICV CVCVYSLILI NSSSRTRLLN IYIYICVCVC IVQEMSVMLP 360 SLTLTSAQGT MIHHGGEERN LYT* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 2.0e-7 | 163 | 252 | 92 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 8.0e-9 | 47 | 252 | 209 | + polygalacturonase ADPG | ||
| pfam12708 | Pectate_lyase_3 | 4.0e-9 | 47 | 100 | 55 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| COG5434 | PGU1 | 8.0e-47 | 47 | 321 | 314 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL38256.1 | 0 | 46 | 313 | 36 | 309 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 46 | 372 | 36 | 371 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 8 | 316 | 6 | 309 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 46 | 381 | 14 | 356 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002526753.1 | 0 | 1 | 313 | 1 | 308 | pentatricopeptide repeat-containing protein, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2uvf_B | 7e-18 | 43 | 287 | 155 | 449 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_A | 7e-18 | 43 | 287 | 155 | 449 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uve_B | 7e-18 | 43 | 287 | 155 | 449 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 2uve_A | 7e-18 | 43 | 287 | 155 | 449 | A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase |
| PDB | 3jur_D | 3e-16 | 46 | 355 | 29 | 355 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
