Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10005317m |
Family | GH28 |
Protein Properties | Length: 350 Molecular Weight: 37648.3 Isoelectric Point: 6.0321 |
Chromosome | Chromosome/Scaffold: 9 Start: 25064865 End: 25067379 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 5 | 337 | 0 |
KEACSNTGAVIVVVPVDKTYRLKPIRFSGPCKANLTVQIYGTLEASDDQSDYKKDGRHWIVFDNVQNLVVEGGGTVNGNGKIWWENSCKINKSLPCKDAP TALTFYKGNNLVVSNLKIQDAQQIHVSFQKCKNVLAFNLMVTAPGDSPNTDGIHVTNTQNIRITSSTIGTGDDCISIVSGSQNVQAQDITCGPGHGISIG SLGKGNSNAYVSEVTVDGAKLSGTANGVRIKTWQGGSGYASNIIFQNIDMVNVKNPIIIDQNYCDQDDPCKEQGSAVHIKNVVFKNIRGTSASDEAVKLD CSKSYPCEAIVLENINLQSEEDEPKALCNNVDD |
Full Sequence |
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Protein Sequence Length: 350 Download |
MQAWKEACSN TGAVIVVVPV DKTYRLKPIR FSGPCKANLT VQIYGTLEAS DDQSDYKKDG 60 RHWIVFDNVQ NLVVEGGGTV NGNGKIWWEN SCKINKSLPC KDAPTALTFY KGNNLVVSNL 120 KIQDAQQIHV SFQKCKNVLA FNLMVTAPGD SPNTDGIHVT NTQNIRITSS TIGTGDDCIS 180 IVSGSQNVQA QDITCGPGHG ISIGSLGKGN SNAYVSEVTV DGAKLSGTAN GVRIKTWQGG 240 SGYASNIIFQ NIDMVNVKNP IIIDQNYCDQ DDPCKEQGSA VHIKNVVFKN IRGTSASDEA 300 VKLDCSKSYP CEAIVLENIN LQSEEDEPKA LCNNVDDLAQ RGSVFPRCP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-79 | 1 | 334 | 336 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-89 | 1 | 335 | 342 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-118 | 8 | 335 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 7.0e-129 | 2 | 323 | 323 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-148 | 2 | 348 | 349 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 2 | 349 | 110 | 456 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 2 | 348 | 110 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002308956.1 | 0 | 2 | 349 | 97 | 443 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322711.1 | 0 | 2 | 348 | 107 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 2 | 349 | 128 | 474 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-26 | 74 | 324 | 113 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-16 | 77 | 335 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-16 | 77 | 335 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-16 | 77 | 335 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-16 | 77 | 335 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE093402 | 256 | 56 | 311 | 0 |
EE091344 | 238 | 85 | 322 | 0 |
EH756941 | 255 | 96 | 349 | 0 |
EH767961 | 250 | 101 | 349 | 0 |
EH769878 | 253 | 16 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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