| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10005491m |
| Family | GH18 |
| Protein Properties | Length: 309 Molecular Weight: 32879.7 Isoelectric Point: 5.17 |
| Chromosome | Chromosome/Scaffold: 9 Start: 27174470 End: 27175800 |
| Description | chitinase A |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH18 | 40 | 258 | 1.2e-28 |
| VISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLW DNFLGGQSSSRPLGDAVLDGIDFDIEGGTNQHWDELARALSNFSQQKKVYLAAAPQCPYPDAWLGGALGTGLFDYVWVQFYNNPPCQYSGNADNLKNSWN QWTSNLSGSGQVFLGLPAS | |||
| Full Sequence |
|---|
| Protein Sequence Length: 309 Download |
| MLSQAILSYK HTMAHQFTLG KFLFCLLQLA ALFTYTSAGV ISVYWGQNGN EGSLADACSS 60 GNYGIVNIAF LTTFGNSQTP QINLAGHCDP TNNGCAGLSN EIKTCQGQGI KVLLSIGGAS 120 GSYSLSSADD ARQVAQYLWD NFLGGQSSSR PLGDAVLDGI DFDIEGGTNQ HWDELARALS 180 NFSQQKKVYL AAAPQCPYPD AWLGGALGTG LFDYVWVQFY NNPPCQYSGN ADNLKNSWNQ 240 WTSNLSGSGQ VFLGLPASPE AAGSGYIPPD VLTSQVLPAI KSSPKYGGVM LWSRQYDKSY 300 SSAIKPSV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3469 | COG3469 | 1.0e-6 | 158 | 303 | 180 | + Chitinase [Carbohydrate transport and metabolism] | ||
| cd02871 | GH18_chitinase_D-like | 6.0e-9 | 63 | 303 | 288 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
| pfam00704 | Glyco_hydro_18 | 1.0e-22 | 39 | 258 | 240 | + Glycosyl hydrolases family 18. | ||
| cd02877 | GH18_hevamine_XipI_class_III | 5.0e-124 | 41 | 306 | 278 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF82271.1 | 0 | 13 | 308 | 1 | 298 | class III chitinase [Panax ginseng] |
| Swiss-Prot | P29060 | 0 | 22 | 308 | 6 | 291 | CHIA_TOBAC RecName: Full=Acidic endochitinase; Flags: Precursor |
| RefSeq | XP_002276365.1 | 0 | 36 | 308 | 47 | 317 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002279661.1 | 0 | 13 | 308 | 1 | 289 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316626.1 | 0 | 41 | 308 | 6 | 272 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2hvm_A | 0 | 39 | 308 | 1 | 273 | A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes |
| PDB | 1llo_A | 0 | 39 | 308 | 1 | 273 | A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes |
| PDB | 1hvq_A | 0 | 39 | 308 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
| PDB | 1kr0_A | 0 | 39 | 308 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
| PDB | 1kr1_A | 0 | 39 | 308 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |
