Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10005522m |
Family | GH18 |
Protein Properties | Length: 301 Molecular Weight: 31745.9 Isoelectric Point: 9.1052 |
Chromosome | Chromosome/Scaffold: 9 Start: 29880405 End: 29881583 |
Description | chitinase A |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH18 | 30 | 248 | 4.8e-29 |
IAIYWGQNGNEGTLTSTCATGKYAYVNIAFLNKFGNGQTPEINLAGHCNPAAGGCRVVSDAIKSCQSRGIKVMLSLGGGVGSYSLASVADAKNVADYLWN NFLGGTSSSRPLGAAVLDGIDFDIEQGSTLHWDDLARFLSAYSSRGKKVYLTAAPQCPFPDRFLGAALNTGLFDYVWVQFYNNPPCQYSSGNTQNLISSF NRWASSLRNGKLFLGLPAA |
Full Sequence |
---|
Protein Sequence Length: 301 Download |
MARNSPAIAT FVSLLVTLSL IKASQGAGGI AIYWGQNGNE GTLTSTCATG KYAYVNIAFL 60 NKFGNGQTPE INLAGHCNPA AGGCRVVSDA IKSCQSRGIK VMLSLGGGVG SYSLASVADA 120 KNVADYLWNN FLGGTSSSRP LGAAVLDGID FDIEQGSTLH WDDLARFLSA YSSRGKKVYL 180 TAAPQCPFPD RFLGAALNTG LFDYVWVQFY NNPPCQYSSG NTQNLISSFN RWASSLRNGK 240 LFLGLPAAPA AAGSGYIPPN VLTSQVLPQI KTSPKYGGVM LWSKFFDDQN GYSSSIRASV 300 * |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd02871 | GH18_chitinase_D-like | 0.002 | 34 | 295 | 315 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
COG3469 | COG3469 | 0.0006 | 147 | 288 | 173 | + Chitinase [Carbohydrate transport and metabolism] | ||
pfam00704 | Glyco_hydro_18 | 2.0e-22 | 28 | 232 | 231 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 2.0e-121 | 28 | 298 | 280 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1HVQ | 0 | 28 | 300 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
EMBL | CAA09110.1 | 0 | 28 | 300 | 27 | 299 | chitinase [Hevea brasiliensis] |
Swiss-Prot | P23472 | 0 | 28 | 300 | 27 | 299 | CHLY_HEVBR RecName: Full=Hevamine-A; Includes: RecName: Full=Chitinase; Includes: RecName: Full=Lysozyme; Flags: Precursor |
RefSeq | XP_002331830.1 | 0 | 21 | 300 | 20 | 296 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513612.1 | 0 | 27 | 300 | 24 | 297 | hevamine-A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2hvm_A | 0 | 28 | 300 | 1 | 273 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
PDB | 1llo_A | 0 | 28 | 300 | 1 | 273 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
PDB | 1hvq_A | 0 | 28 | 300 | 1 | 273 | A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein With Chitinase And Lysozyme Activity, And Its Complex With An Inhibitor |
PDB | 1kr0_A | 0 | 28 | 300 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 1kr1_A | 0 | 28 | 300 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |