Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10006424m |
Family | PL4 |
Protein Properties | Length: 696 Molecular Weight: 80278.7 Isoelectric Point: 9.9093 |
Chromosome | Chromosome/Scaffold: 9 Start: 25844751 End: 25846838 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 67 | 673 | 0 |
RPEVVMSNGLVQVTVSRPGGGVTGIKYKGIDNLLDYKNKEERRGYWDVIWNEPRDPTGSYDVLKATKFRVVKLDEDQVELSFTRKWNFSHRGSLVPLNVD MRYIMRRGVSGFYFYAIMEREEGWPDVYMDQIRAVFKLREDKFRYMALSDHKQKLMALNEDRVRGQTLDYREAVLLTNPTDQRLKGEVDDKYQYSSENKD NRVHGWISHNPRVGFWMITPSDEFRTCGPIKQELTSHAGPTVLSMFSSTHYAGREIDTFYAKGQPWKKVLGPAFVYLNSVSSRENPRALWEDAKQQMLRE VQSWPYDFPRSKDFPKSYQRGRVSGQLQVHDRYVNEKPMSAKSAYVGLAAPGDAGSWQAETRGYQFWTKTDEEGHFTIENVREGDYNLYAWVPGFVGDYK YGFNITVRAGSKINLGTVVFEPPRNGPTLWEIGVPDRSAAEFFVPDPYTKYKNPVFTGPSDKFRQYGLWERYADFYPKDDLLYTIGVSNYTRDWFFAHVN RKVGNNTFQPTTRQIIFQLEDVSNKGNYTLQLALSAATFSNLRVRLNFNSRRRNMRPLFSTGTIGRDNAIARHGIHGLYRFYSINVPRYLLNRGNNTIYL TQSRNNG |
Full Sequence |
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Protein Sequence Length: 696 Download |
MAKKRRSCEG IRASGVVLLA LVIIQSFSLL GACSPETSSF RNGPRSFNNK GELKISPRVK 60 LYMNRYRPEV VMSNGLVQVT VSRPGGGVTG IKYKGIDNLL DYKNKEERRG YWDVIWNEPR 120 DPTGSYDVLK ATKFRVVKLD EDQVELSFTR KWNFSHRGSL VPLNVDMRYI MRRGVSGFYF 180 YAIMEREEGW PDVYMDQIRA VFKLREDKFR YMALSDHKQK LMALNEDRVR GQTLDYREAV 240 LLTNPTDQRL KGEVDDKYQY SSENKDNRVH GWISHNPRVG FWMITPSDEF RTCGPIKQEL 300 TSHAGPTVLS MFSSTHYAGR EIDTFYAKGQ PWKKVLGPAF VYLNSVSSRE NPRALWEDAK 360 QQMLREVQSW PYDFPRSKDF PKSYQRGRVS GQLQVHDRYV NEKPMSAKSA YVGLAAPGDA 420 GSWQAETRGY QFWTKTDEEG HFTIENVREG DYNLYAWVPG FVGDYKYGFN ITVRAGSKIN 480 LGTVVFEPPR NGPTLWEIGV PDRSAAEFFV PDPYTKYKNP VFTGPSDKFR QYGLWERYAD 540 FYPKDDLLYT IGVSNYTRDW FFAHVNRKVG NNTFQPTTRQ IIFQLEDVSN KGNYTLQLAL 600 SAATFSNLRV RLNFNSRRRN MRPLFSTGTI GRDNAIARHG IHGLYRFYSI NVPRYLLNRG 660 NNTIYLTQSR NNGPFQGVMY DYIRFEGPPN SNEGS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0004 | 434 | 481 | 48 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 2.0e-32 | 385 | 483 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 7.0e-48 | 496 | 686 | 193 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-60 | 69 | 348 | 285 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 1.0e-77 | 69 | 254 | 188 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 70 | 688 | 62 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 4 | 688 | 2 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 70 | 691 | 1 | 620 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 10 | 688 | 5 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 70 | 688 | 2 | 618 | lyase, putative [Ricinus communis] |