y
Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10006636m |
Family | PL4 |
Protein Properties | Length: 156 Molecular Weight: 17523 Isoelectric Point: 9.658 |
Chromosome | Chromosome/Scaffold: 9 Start: 2960895 End: 2961452 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 42 | 155 | 3.4e-32 |
NPNDDIPYTIGVSNNTREWFFAHVTSKIIFQLENVSSKGNYTLQLALSAASYSNLRLQFNFNICQRDRRPLFSTGTIAKDNAIARHGIHGLCRFYVINVP SYLLYRGNNTIYLT |
Full Sequence |
---|
Protein Sequence Length: 156 Download |
MGQITLKRSI FDTCFKSPST PAVIFNKGNT DCGNDLKIFV PNPNDDIPYT IGVSNNTREW 60 FFAHVTSKII FQLENVSSKG NYTLQLALSA ASYSNLRLQF NFNICQRDRR PLFSTGTIAK 120 DNAIARHGIH GLCRFYVINV PSYLLYRGNN TIYLT* 180 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10317 | RGL4_C | 3.0e-26 | 43 | 155 | 117 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD94618.1 | 2e-31 | 43 | 154 | 366 | 485 | LG127/30 like gene [Arabidopsis thaliana] |
EMBL | CAB37543.1 | 6e-31 | 43 | 154 | 505 | 624 | LG127/30 like gene [Arabidopsis thaliana] |
RefSeq | NP_176700.1 | 2e-32 | 43 | 154 | 104 | 223 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_195516.2 | 6e-31 | 43 | 154 | 523 | 642 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002527245.1 | 5e-31 | 43 | 155 | 476 | 597 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
CV229149 | 126 | 43 | 155 | 3e-31 |
EE260349 | 125 | 43 | 155 | 5e-31 |
AV528105 | 123 | 43 | 154 | 5e-30 |
DW238058 | 123 | 46 | 155 | 8e-30 |
DW229853 | 123 | 46 | 155 | 1e-29 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|