Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10006909m |
Family | CE8 |
Protein Properties | Length: 352 Molecular Weight: 39767 Isoelectric Point: 9.2952 |
Chromosome | Chromosome/Scaffold: 9 Start: 796756 End: 798547 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 58 | 342 | 0 |
KVDINGDGDFKSIQDAINAVPKGNPNWIIIHVRKGVYREKVYIPEDKPYIFMRGNGKGKTAIVWSQSATNNKDSATFSVEAPHFIAFGISFKNEAPTGVA FTSQNQSVAAFVGADMNAFYHCAFYSTHNTLFDYKGRHYYHNCYIQGSIDFIFGRGRSIFQNCEIFVIDDKRVKIHGSITAQNREDNTDNSGFVFIEGKV YGTGDVYLGRAKGAYSRVVFAKTYLSRTIVPHGWTNWSYVGSTDNLFQAEYRCHGPGAEAKHRVPWSKQLSDQEAEKFMSIDFVD |
Full Sequence |
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Protein Sequence Length: 352 Download |
MSSSYLLPWR FFRLINVAGV ILFLQLTCFS DRVHSLTKKT VFDAPLLTEK LNTNRTIKVD 60 INGDGDFKSI QDAINAVPKG NPNWIIIHVR KGVYREKVYI PEDKPYIFMR GNGKGKTAIV 120 WSQSATNNKD SATFSVEAPH FIAFGISFKN EAPTGVAFTS QNQSVAAFVG ADMNAFYHCA 180 FYSTHNTLFD YKGRHYYHNC YIQGSIDFIF GRGRSIFQNC EIFVIDDKRV KIHGSITAQN 240 REDNTDNSGF VFIEGKVYGT GDVYLGRAKG AYSRVVFAKT YLSRTIVPHG WTNWSYVGST 300 DNLFQAEYRC HGPGAEAKHR VPWSKQLSDQ EAEKFMSIDF VDGKNWLPAW V* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 4.0e-90 | 29 | 347 | 322 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 2.0e-92 | 51 | 347 | 297 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-96 | 55 | 347 | 296 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-100 | 34 | 348 | 325 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 0 | 1 | 350 | 350 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 16 | 351 | 11 | 346 | unknown [Glycine max] |
RefSeq | NP_188331.1 | 0 | 20 | 351 | 7 | 340 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002272939.1 | 0 | 11 | 351 | 5 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311381.1 | 0 | 19 | 350 | 12 | 341 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523016.1 | 0 | 14 | 351 | 6 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 49 | 349 | 1 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-36 | 62 | 347 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 0.00000000000004 | 67 | 348 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 0.00000000000004 | 67 | 348 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 0.00000000000004 | 67 | 348 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CO115605 | 288 | 18 | 304 | 0 |
GR458872 | 284 | 60 | 343 | 0 |
ES902377 | 275 | 74 | 348 | 0 |
DY022435 | 264 | 53 | 316 | 0 |
CO124627 | 243 | 40 | 282 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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