Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10006970m |
Family | GH28 |
Protein Properties | Length: 381 Molecular Weight: 41222.9 Isoelectric Point: 6.9219 |
Chromosome | Chromosome/Scaffold: 9 Start: 23836791 End: 23838227 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 368 | 0 |
EACNWNTYSTVLVPPGKYLVTSVVFKGPCKAPISFQLQGLILAPPGLSKLADKESWITFESLRSFTLTGGGTFHGQGRTAWPENQCHKNSNCQLPISIRF NKLNDSTITGVQSVDSKFFHINILGCYNLKLNKINISAPDDTTGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNG VRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKG PAISSCSNVKP |
Full Sequence |
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Protein Sequence Length: 381 Download |
MDYSSCSQLL VLAILVLFTL AQNIINAAPN GVFNVIDFGA VADGIRDNSK AFENAWREAC 60 NWNTYSTVLV PPGKYLVTSV VFKGPCKAPI SFQLQGLILA PPGLSKLADK ESWITFESLR 120 SFTLTGGGTF HGQGRTAWPE NQCHKNSNCQ LPISIRFNKL NDSTITGVQS VDSKFFHINI 180 LGCYNLKLNK INISAPDDTT GDDCVSLGDG SQNVLVSDVS CGPGHGISVG SLGKYKKEED 240 VVGLTVINCT FTGTSNGVRI KTWPDSEDGK ASNFTFEDLF MNNVENPIVI DQEYCPHNQC 300 NIKVPSRVKI SNVRFRNIRG TSLTKEAVRI VCSKEIPCQN VEIGDINLVY NGIDDKGPAI 360 SSCSNVKPTL VGKQIPATCV * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-70 | 34 | 348 | 343 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-76 | 32 | 352 | 349 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-89 | 25 | 380 | 381 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-90 | 60 | 367 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-123 | 22 | 379 | 382 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002269648.1 | 0 | 38 | 380 | 2 | 364 | PREDICTED: hypothetical protein, partial [Vitis vinifera] |
RefSeq | XP_002274125.1 | 0 | 32 | 380 | 27 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 32 | 379 | 27 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 32 | 379 | 27 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 32 | 379 | 27 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 0.000000000001 | 34 | 348 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 0.000000005 | 122 | 366 | 74 | 333 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 0.000000005 | 122 | 366 | 74 | 333 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 0.000000005 | 122 | 366 | 74 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 0.00000001 | 78 | 328 | 49 | 341 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |