Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10007120m |
Family | CE8 |
Protein Properties | Length: 337 Molecular Weight: 37198.3 Isoelectric Point: 8.9571 |
Chromosome | Chromosome/Scaffold: 9 Start: 15080665 End: 15083824 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 39 | 326 | 0 |
IVVDHSGHGNFSSIQSAIDNVPSNNKNWVCIFIKAGIYREKVKIPYEKPFIILKGVGKRKTRIIWDDHESLAASPTFASFADNVVVKSMSFVNSYNSPRS DNKNPRMPAVAAMVAGDKTAFYRCGFSGVQDTLWDDQGRHYFDRCTIEGAVDFIFGGGQSIYENCVINVVGSTLQPGLHGFITAQGRTNPNDANGFVFKG GIVIGTGSTLLGRPWRGYARVLFYSVNLTNVVDPKGWEAWNSIGHENHLTFAEHGCYGGGADTSRRVRWEKKLSSAELTHLTSISFID |
Full Sequence |
---|
Protein Sequence Length: 337 Download |
MPFARCLFCL CVLLFTCHLG TTNAKSFFKL GSRAASCQIV VDHSGHGNFS SIQSAIDNVP 60 SNNKNWVCIF IKAGIYREKV KIPYEKPFII LKGVGKRKTR IIWDDHESLA ASPTFASFAD 120 NVVVKSMSFV NSYNSPRSDN KNPRMPAVAA MVAGDKTAFY RCGFSGVQDT LWDDQGRHYF 180 DRCTIEGAVD FIFGGGQSIY ENCVINVVGS TLQPGLHGFI TAQGRTNPND ANGFVFKGGI 240 VIGTGSTLLG RPWRGYARVL FYSVNLTNVV DPKGWEAWNS IGHENHLTFA EHGCYGGGAD 300 TSRRVRWEKK LSSAELTHLT SISFIDREGW LHKQPY* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 4.0e-75 | 39 | 331 | 300 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 2.0e-87 | 39 | 331 | 294 | + Probable pectinesterase | ||
PLN02432 | PLN02432 | 9.0e-89 | 31 | 331 | 301 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 4.0e-112 | 39 | 335 | 298 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 0 | 38 | 335 | 298 | + probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01354.1 | 0 | 4 | 335 | 12 | 328 | pectin methylesterase-like protein [Arabidopsis thaliana] |
RefSeq | NP_189055.1 | 0 | 4 | 335 | 12 | 332 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | NP_197400.1 | 0 | 4 | 335 | 12 | 327 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002323773.1 | 0 | 39 | 335 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 39 | 335 | 48 | 335 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4.06377e-44 | 39 | 336 | 9 | 313 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-32 | 40 | 307 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 3e-18 | 26 | 253 | 19 | 269 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 2e-16 | 39 | 318 | 7 | 330 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 2e-16 | 39 | 318 | 7 | 330 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |