| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10007687m |
| Family | CBM57 |
| Protein Properties | Length: 658 Molecular Weight: 71623.8 Isoelectric Point: 8.037 |
| Chromosome | Chromosome/Scaffold: 1 Start: 1740652 End: 1745322 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 409 | 577 | 2.4e-31 |
| SIKCGGTQIASASGIEFDDDSKTLEAASFYTSSGNQWAVSNTGNFISSPNGPLYIAQTDSQITGTLDSELYKTARISPSSLRYYGLGLKNGKYRIDLHFA EITMEDSLSWKGLGRRVFDVYIQGERVLRDLNIKKEAGGSKRALVKTFEANVTNTIIEIHFFWAGKGTC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 658 Download |
| MELLRPSLLL TVSLSLLQLV SAQTSTDSAE VDALNKLIDY WNLRSKINLT TIDPCTRNAS 60 WASENANPRV ACDCTSNSCH ITHLKIYALD IMGELPSELF MLRKLMDLNL GQNVLNGSIP 120 AEIGQLSNMQ YLSLGINNFT GRVPTELGNL TKLISLSFSS NNFFGPLPKE LGKLTSLQQL 180 YIDSSGVTGS IPQEFANLKS LRILWASDNL FTGKIPEFFG TLTELADLRL QGTLLEGPIP 240 RSFRALNKLE DLRIGDLSAE DSTLDFLESQ KSLSILSLRN CRVSGKIPDQ LGTFAKLQLL 300 DLSFNKLTGQ IPTSLQDLSM LQYLYLGNNN LSGELPVNII APNLIALDVS YNPLSGNLPR 360 NFAKGGLSMN VIGSSINANN LQDGKALGMM QCLHSNTKCS NKVPSSSFSI KCGGTQIASA 420 SGIEFDDDSK TLEAASFYTS SGNQWAVSNT GNFISSPNGP LYIAQTDSQI TGTLDSELYK 480 TARISPSSLR YYGLGLKNGK YRIDLHFAEI TMEDSLSWKG LGRRVFDVYI QGERVLRDLN 540 IKKEAGGSKR ALVKTFEANV TNTIIEIHFF WAGKGTCCIP FQGTYGPLVS AIHASQVSTG 600 NGSSKGDKKH VGKIVGITVG CAAALVIISS VFYLWWTKDS SSHIRIFTDS PKQNLVR* 660 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 1.0e-35 | 84 | 412 | 335 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 3.0e-37 | 81 | 358 | 282 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 3.0e-37 | 93 | 364 | 275 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-39 | 42 | 363 | 324 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 3.0e-57 | 407 | 592 | 189 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI21051.1 | 0 | 9 | 653 | 3 | 649 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002282711.1 | 0 | 9 | 653 | 159 | 791 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309634.1 | 0 | 18 | 596 | 15 | 465 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002324865.1 | 0 | 18 | 652 | 15 | 593 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515504.1 | 0 | 21 | 653 | 263 | 894 | ATP binding protein, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rj0_A | 1e-26 | 76 | 336 | 412 | 718 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
| PDB | 3rj0_A | 3e-20 | 73 | 359 | 218 | 480 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
| PDB | 3rj0_A | 2e-19 | 105 | 360 | 393 | 695 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
| PDB | 3rj0_A | 7e-19 | 82 | 360 | 335 | 647 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
| PDB | 3rj0_A | 2e-16 | 90 | 333 | 474 | 739 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
