Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10007868m |
Family | GT5 |
Protein Properties | Length: 569 Molecular Weight: 63298.1 Isoelectric Point: 7.3301 |
Chromosome | Chromosome/Scaffold: 1 Start: 26189199 End: 26200039 |
Description | starch synthase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 112 | 560 | 0 |
HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYG GSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGH NPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLV VCITRLVAQKGLHLITHTIKRAEELGGQMILLGNSPVHWVQKDFEDLANLHNKGTSTRILLMYSEELSHMLYAAADIVLVPSIYEPCGLAQMIGMRYGAV PVVRKTGGLADTVFDMDDPSNHEKANGFVFEGIDEGSLNWALDRAFRHF |
Full Sequence |
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Protein Sequence Length: 569 Download |
MKMECAIAGK LSSTSSYLVN TRRNGMKRTK LMANHNMFYS SKSMISLPIL AHTNPSLKVV 60 TEKLGCPADF GFGELVWPTP GDEIPFWKNK FPSRYASLEA PAEIEKDSNL MHIIHITAEM 120 APIAKVGGLG DVVTGLARAC LSRGHTVDIM LPFYECIQKQ EISDLALITT YNSYHDGNWV 180 ATNAYHGVVS SIPVIFIEPS NQFFKGKNVY GGSYNELEAY LFFSRACLEW MQVTGVQPDI 240 IHVHEWQIGA LPLLYWDMYQ SLSLKKPRIV LTIHNMEHYG ECRQEQLSKC GLDGSIYASV 300 EKAIDDRTIG HNPERLSLLK GGIVYSNAVV TVSPTYLKET LCSGWLASVL ITHRDKYFGI 360 LNGIDTVIWN PATDAFLPAK FHAQKPEGKK ICKYYIQKGL GLKSEGTVPL VVCITRLVAQ 420 KGLHLITHTI KRAEELGGQM ILLGNSPVHW VQKDFEDLAN LHNKGTSTRI LLMYSEELSH 480 MLYAAADIVL VPSIYEPCGL AQMIGMRYGA VPVVRKTGGL ADTVFDMDDP SNHEKANGFV 540 FEGIDEGSLN WALDRAFRHF IGSKFCLH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 2.0e-123 | 111 | 556 | 454 | + synthase/transferase | ||
PRK00654 | glgA | 7.0e-142 | 111 | 560 | 462 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 2.0e-156 | 111 | 558 | 454 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PLN02939 | PLN02939 | 3.0e-158 | 108 | 560 | 462 | + transferase, transferring glycosyl groups | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-168 | 112 | 560 | 455 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACD13790.1 | 0 | 65 | 560 | 83 | 576 | starch synthase VI precursor [Solanum lycopersicum] |
GenBank | ACD13791.1 | 0 | 58 | 560 | 55 | 569 | starch synthase VI precursor [Vitis vinifera] |
GenBank | ACL36485.1 | 0 | 22 | 560 | 65 | 617 | starch synthase VI precursor [Picea glauca] |
RefSeq | XP_002268126.1 | 0 | 58 | 560 | 55 | 569 | PREDICTED: starch synthase VI [Vitis vinifera] |
RefSeq | XP_002331426.1 | 0 | 1 | 560 | 1 | 579 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 111 | 557 | 1 | 439 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 111 | 557 | 1 | 439 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 111 | 557 | 1 | 439 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 111 | 557 | 1 | 439 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 111 | 557 | 1 | 439 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GE474726 | 265 | 133 | 397 | 0 |
EX373959 | 300 | 185 | 472 | 0 |
EY654065 | 214 | 1 | 214 | 0 |
EY654065 | 46 | 196 | 235 | 0.0002 |
EY654065 | 61 | 206 | 265 | 0.003 |
Sequence Alignments (This image is cropped. Click for full image.) |
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