Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10008093m |
Family | GH28 |
Protein Properties | Length: 496 Molecular Weight: 55505.6 Isoelectric Point: 9.0047 |
Chromosome | Chromosome/Scaffold: 1 Start: 24602749 End: 24608633 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 109 | 456 | 0 |
KGGGQLNVPPGRWLTAPFNLTSHMTLFLADDAEILAIENEKYWPLMPPLPSYGYGREHHGPRFGSFIHGQNLKDVVITGHNGTINGQGQAWWKKYRQKLL NNTRGPLVQIMWSSDILISNITLRDSPFWTLHPYDCKNVTIRNVTILAPIFEAPNTDGIDPDSCEDMVIEDCYISVGDDAIAIKSGWDQYGIAYGRPSMN ILIRNLVVQSMVSAGVSIGSEMSGGVSNVTVENLLVWSSRRAVRIKTAPGRGGYVQNINYRNLTFDNVRVGIVIKTDYNEHPDEGYDPKALPILKDISFI GVHGQGVRVPVRIHGSEEILVRNITFQDMSVGLTYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 496 Download |
MVEILSLGRF HLHQNRPDLR RWVPAFLSSH KTLFTVLWLA AFASVFIWQR NAVVGGFSFL 60 RWGVASRPIP RLRPVAFNLT DFGGVGDGVT LNTEAFQRAV YAISKLGKKG GGQLNVPPGR 120 WLTAPFNLTS HMTLFLADDA EILAIENEKY WPLMPPLPSY GYGREHHGPR FGSFIHGQNL 180 KDVVITGHNG TINGQGQAWW KKYRQKLLNN TRGPLVQIMW SSDILISNIT LRDSPFWTLH 240 PYDCKNVTIR NVTILAPIFE APNTDGIDPD SCEDMVIEDC YISVGDDAIA IKSGWDQYGI 300 AYGRPSMNIL IRNLVVQSMV SAGVSIGSEM SGGVSNVTVE NLLVWSSRRA VRIKTAPGRG 360 GYVQNINYRN LTFDNVRVGI VIKTDYNEHP DEGYDPKALP ILKDISFIGV HGQGVRVPVR 420 IHGSEEILVR NITFQDMSVG LTYKKKHIFQ CAFVQGRVIG TIFPAPCENL DLYDEQKRLV 480 KRSMSQNVTD IDYDF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-24 | 77 | 456 | 390 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-27 | 32 | 467 | 457 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-32 | 76 | 440 | 382 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-40 | 171 | 446 | 282 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-68 | 65 | 397 | 359 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 495 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 495 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 495 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 12 | 495 | 13 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 495 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 70 | 436 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-20 | 121 | 435 | 52 | 368 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 452 | 1 | 451 | 0 |
FC892952 | 306 | 9 | 314 | 0 |
DY299512 | 306 | 9 | 314 | 0 |
DY291517 | 344 | 21 | 361 | 0 |
DY299512 | 67 | 313 | 375 | 2.3 |
Sequence Alignments (This image is cropped. Click for full image.) |
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