y
Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10008126m |
Family | GT4 |
Protein Properties | Length: 489 Molecular Weight: 54523.7 Isoelectric Point: 8.7839 |
Chromosome | Chromosome/Scaffold: 1 Start: 15909467 End: 15911358 |
Description | UDP-Glycosyltransferase superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT4 | 305 | 439 | 1.6e-21 |
GVAGRLVRDKGHPLLYEAFSSITRDHPGVYLLVAGTGPWGRRNAELGQNVKVLGALEAHQLSEFYNALDAFVNPTLRPQGLDLTLIEAMHCGRTVLTPNY PSIVRTVVVNEELGYTFSPNVKSFVEALELVIRDG |
Full Sequence |
---|
Protein Sequence Length: 489 Download |
MKNSASVSHI PFPVMGLKHQ SCRNSSSFSP LSLRYSTVLI SALFFTSFYL FISPLRHVPE 60 PGFLKGEGKR FIGDLRDAKF SWNKLCFGPT FEKLKLAVFS KTWPIGAAPG GMERHASTLY 120 HALAARGHEI HVFTAPSDRK PHNDVHQGNL HVHFAANDHG SVNLNNDGAF DYVHTESVSL 180 PHWRAKMVPN VAVTWHGIWY EVMHSKLFGE LFSNQNGVLP GSMTELQEAM PRLVDEIRFF 240 SSYNQHICIS NSAAEVLVKI YQLPQRNVHV ILNGVDETKF VHDPEAGVRF PEKLGVPANV 300 SLVMGVAGRL VRDKGHPLLY EAFSSITRDH PGVYLLVAGT GPWGRRNAEL GQNVKVLGAL 360 EAHQLSEFYN ALDAFVNPTL RPQGLDLTLI EAMHCGRTVL TPNYPSIVRT VVVNEELGYT 420 FSPNVKSFVE ALELVIRDGP KVLQRKGLAC KEHALSMFTA TKMASAYERF FLRMKNPIYC 480 QYPFPVDC* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd03808 | GT1_cap1E_like | 4.0e-26 | 105 | 469 | 394 | + This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides. | ||
COG0438 | RfaG | 1.0e-29 | 95 | 477 | 400 | + Glycosyltransferase [Cell envelope biogenesis, outer membrane] | ||
cd03807 | GT1_WbnK_like | 2.0e-34 | 238 | 471 | 245 | + This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis. | ||
cd03798 | GT1_wlbH_like | 2.0e-37 | 110 | 471 | 401 | + This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS. | ||
cd03801 | GT1_YqgM_like | 2.0e-56 | 95 | 471 | 400 | + This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55663.1 | 0 | 38 | 476 | 28 | 474 | AC008017_36 Hypothetical protein [Arabidopsis thaliana] |
RefSeq | NP_177459.1 | 0 | 38 | 487 | 28 | 485 | glycosyl transferase family 1 protein [Arabidopsis thaliana] |
RefSeq | XP_002317369.1 | 0 | 15 | 488 | 1 | 484 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326600.1 | 0 | 39 | 482 | 21 | 487 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002524261.1 | 0 | 15 | 487 | 1 | 484 | glycosyltransferase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3okp_A | 0.000001 | 273 | 400 | 170 | 307 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 3okc_A | 0.000001 | 273 | 400 | 170 | 307 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' Bound To Gdp (Orthorhombic Crystal Form) |
PDB | 3oka_B | 0.000001 | 273 | 400 | 170 | 307 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
PDB | 3oka_A | 0.000001 | 273 | 400 | 170 | 307 | A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In Complex With Gdp-Man (Triclinic Crystal Form) |
PDB | 2f9f_A | 0.0001 | 352 | 441 | 78 | 165 | A Chain A, Crystal Structure Of The Putative Mannosyl Transferase (Wbaz-1)from Archaeoglobus Fulgidus, Northeast Structural Genomics Target Gr29a |