| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10008656m |
| Family | GT5 |
| Protein Properties | Length: 379 Molecular Weight: 42059.8 Isoelectric Point: 7.9884 |
| Chromosome | Chromosome/Scaffold: 1 Start: 26191456 End: 26198908 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 2 | 351 | 0 |
| HIIHITAEMAPIAKVGGLGDVVTGLARACLSRGHTVDIMLPFYECIQKQEISDLALITTYNSYHDGNWVATNAYHGVVSSIPVIFIEPSNQFFKGKNVYG GSYNELEAYLFFSRACLEWMQVTGVQPDIIHVHEWQIGALPLLYWDMYQSLSLKKPRIVLTIHNMEHYGECRQEQLSKCGLDGSIYASVEKAIDDRTIGH NPERLSLLKGGIVYSNAVVTVSPTYLKETLCSGWLASVLITHRDKYFGILNGIDTVIWNPATDAFLPAKFHAQKPEGKKICKYYIQKGLGLKSEGTVPLV VCITRLVAQKGLHLITHTIKRAEELGGQMILLGNSPVHWVQKDFEDLANL | |||
| Full Sequence |
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| Protein Sequence Length: 379 Download |
| MHIIHITAEM APIAKVGGLG DVVTGLARAC LSRGHTVDIM LPFYECIQKQ EISDLALITT 60 YNSYHDGNWV ATNAYHGVVS SIPVIFIEPS NQFFKGKNVY GGSYNELEAY LFFSRACLEW 120 MQVTGVQPDI IHVHEWQIGA LPLLYWDMYQ SLSLKKPRIV LTIHNMEHYG ECRQEQLSKC 180 GLDGSIYASV EKAIDDRTIG HNPERLSLLK GGIVYSNAVV TVSPTYLKET LCSGWLASVL 240 ITHRDKYFGI LNGIDTVIWN PATDAFLPAK FHAQKPEGKK ICKYYIQKGL GLKSEGTVPL 300 VVCITRLVAQ KGLHLITHTI KRAEELGGQM ILLGNSPVHW VQKDFEDLAN LVMSCRLLKN 360 LSPKASSTPF GGVKASWL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 9.0e-81 | 1 | 350 | 351 | + synthase/transferase | ||
| PRK00654 | glgA | 6.0e-92 | 1 | 334 | 346 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 4.0e-105 | 1 | 334 | 340 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PLN02939 | PLN02939 | 5.0e-112 | 1 | 350 | 358 | + transferase, transferring glycosyl groups | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 3.0e-116 | 2 | 350 | 355 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACD13790.1 | 0 | 1 | 351 | 125 | 477 | starch synthase VI precursor [Solanum lycopersicum] |
| GenBank | ACD13791.1 | 0 | 1 | 351 | 108 | 470 | starch synthase VI precursor [Vitis vinifera] |
| GenBank | ACL36485.1 | 0 | 1 | 350 | 155 | 516 | starch synthase VI precursor [Picea glauca] |
| RefSeq | XP_002268126.1 | 0 | 1 | 351 | 108 | 470 | PREDICTED: starch synthase VI [Vitis vinifera] |
| RefSeq | XP_002331426.1 | 0 | 1 | 351 | 118 | 480 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 2e-35 | 1 | 334 | 1 | 328 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3cx4_A | 6e-35 | 1 | 334 | 1 | 328 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3cop_A | 6e-35 | 1 | 334 | 1 | 328 | A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso |
| PDB | 3guh_A | 7e-35 | 1 | 334 | 1 | 328 | A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso |
| PDB | 2r4u_A | 7e-35 | 1 | 334 | 1 | 328 | A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex With Adp And Acceptor Analogue Heppso |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GE474726 | 265 | 23 | 287 | 0 |
| EX373959 | 288 | 75 | 350 | 0 |
| CO474248 | 254 | 21 | 274 | 0 |
| DV993959 | 263 | 24 | 286 | 0 |
| DT588660 | 242 | 15 | 256 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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