Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10010440m |
Family | GH28 |
Protein Properties | Length: 420 Molecular Weight: 43914.7 Isoelectric Point: 4.7736 |
Chromosome | Chromosome/Scaffold: 1 Start: 1886650 End: 1889832 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 372 | 0 |
CSATGDSSTLEIPANKAFLLQSTTFRGPCKSNSVNIQVSGTIVAPDSKSWKQCGSQCWLSLYDVQGLSIDGSGTIDGNGRGWWNQAVYFHNCNNLQVKGI TIVNSPKSHISINTCNGVSVSNIHIDSPEDSPNTDGIDISSSTQVNILDSSIKSGDDCVAINGGSSKINITGVACGPGHGISVGSLGLDGADDKVEEVHV RNCNFTGTQNGARIKTSPGGSGYARGISFEHITLIESKNPIIIDQHYCVGGGGCKGTSAVNVSEVTYSDVRGSSADEKAITFDCSEEGCFGIKMEQVSIT SSVPGKETIAYCQNAHGT |
Full Sequence |
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Protein Sequence Length: 420 Download |
DLLITSSFLI LCIAISSLVG IGDGRNTFNV VDFGAIGDGK TDDSDAFAKA WTDFCSATGD 60 SSTLEIPANK AFLLQSTTFR GPCKSNSVNI QVSGTIVAPD SKSWKQCGSQ CWLSLYDVQG 120 LSIDGSGTID GNGRGWWNQA VYFHNCNNLQ VKGITIVNSP KSHISINTCN GVSVSNIHID 180 SPEDSPNTDG IDISSSTQVN ILDSSIKSGD DCVAINGGSS KINITGVACG PGHGISVGSL 240 GLDGADDKVE EVHVRNCNFT GTQNGARIKT SPGGSGYARG ISFEHITLIE SKNPIIIDQH 300 YCVGGGGCKG TSAVNVSEVT YSDVRGSSAD EKAITFDCSE EGCFGIKMEQ VSITSSVPGK 360 ETIAYCQNAH GTSSSTSPHV GCLTDVESQI AMVKCTRYKI AYENTDAISS KLKDGKSDY* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 1.0e-81 | 57 | 375 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-84 | 27 | 370 | 362 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-98 | 28 | 390 | 381 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-104 | 26 | 383 | 371 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-124 | 20 | 376 | 361 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA20037.1 | 0 | 20 | 383 | 7 | 368 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | XP_002309621.1 | 0 | 28 | 360 | 3 | 342 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002324855.1 | 0 | 7 | 384 | 7 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 8 | 384 | 8 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
RefSeq | XP_002515527.1 | 0 | 3 | 387 | 4 | 358 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 1e-26 | 128 | 354 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-26 | 128 | 354 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-26 | 128 | 354 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-26 | 128 | 354 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 1e-26 | 128 | 354 | 79 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |