| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10010593m |
| Family | CE8 |
| Protein Properties | Length: 360 Molecular Weight: 40304.5 Isoelectric Point: 7.5831 |
| Chromosome | Chromosome/Scaffold: 1 Start: 23346722 End: 23348273 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 61 | 353 | 0 |
| IIVDKNGGGHSSTVQGAVDLVPENNSERVKIYILPGVYREKVTVPQNKPYISFIGHEQRASETVISWHNKASDKDSNGIELGTYKSASVSVFADFFCATG ITFANTVVAVPGGIGMQAVALRLAGDKAMLYKVKVLGTQDTLLDDTGSHYFYQCHIQGSIDFIFGRARSLYQDCVLQSIAEKSGAIAAHHRDIPDDSSGF SFVNCVINGTGKIYLGRAWGNYSRIIYSYSYLEDIIYPTGWSDWNMPYRDRTVVFGEYQCSGKGADRSHRPSWLKSLSYEEVQPFLNVTFIDG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 360 Download |
| MGRSAFLVAF AGFLLIVQVS LSQHEAAYSY RRNFITWDDL KVDWQKAWLD TRESVNRTRL 60 IIVDKNGGGH SSTVQGAVDL VPENNSERVK IYILPGVYRE KVTVPQNKPY ISFIGHEQRA 120 SETVISWHNK ASDKDSNGIE LGTYKSASVS VFADFFCATG ITFANTVVAV PGGIGMQAVA 180 LRLAGDKAML YKVKVLGTQD TLLDDTGSHY FYQCHIQGSI DFIFGRARSL YQDCVLQSIA 240 EKSGAIAAHH RDIPDDSSGF SFVNCVINGT GKIYLGRAWG NYSRIIYSYS YLEDIIYPTG 300 WSDWNMPYRD RTVVFGEYQC SGKGADRSHR PSWLKSLSYE EVQPFLNVTF IDGKEWLRL* 360 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02432 | PLN02432 | 1.0e-101 | 54 | 358 | 305 | + putative pectinesterase |
| PLN02304 | PLN02304 | 5.0e-107 | 55 | 358 | 313 | + probable pectinesterase |
| PLN02634 | PLN02634 | 1.0e-113 | 59 | 357 | 301 | + probable pectinesterase |
| PLN02682 | PLN02682 | 9.0e-120 | 58 | 359 | 304 | + pectinesterase family protein |
| PLN02671 | PLN02671 | 0 | 32 | 359 | 328 | + pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEE67559.1 | 0 | 33 | 359 | 32 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
| RefSeq | NP_200370.1 | 0 | 5 | 359 | 9 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
| RefSeq | XP_002264297.1 | 0 | 1 | 359 | 1 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298857.1 | 0 | 47 | 359 | 6 | 318 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002522727.1 | 0 | 7 | 359 | 33 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 61 | 358 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 2e-36 | 62 | 358 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.000000000001 | 68 | 234 | 41 | 215 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.00000000002 | 73 | 238 | 20 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.00000000002 | 73 | 238 | 20 | 192 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
