| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10010616m |
| Family | CE8 |
| Protein Properties | Length: 360 Molecular Weight: 39770.4 Isoelectric Point: 9.8559 |
| Chromosome | Chromosome/Scaffold: 1 Start: 7860508 End: 7863374 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 62 | 353 | 0 |
| TVAKNPAAGDFTKIQDAIDSLPFINLVRVVIKVHAGVYKEKVNIPPFKSFITIEGAGADKTIVQWGDTAQTRGPRGQPIGTWASATFAVNAPYFIAKNIT FKNTTPVPAPGAVGKQAVAFRISADTATFWGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQYTGALTAQGRSSLLEDTGFS FVNCKVTGSGALYLGRAWGPFSRVVFAYTDMDNIIIPKGWYNWGDPNREMTVFYGQYKCKGPGASFAGRVSWARELTDEEAKPFISLSFIDG | |||
| Full Sequence |
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| Protein Sequence Length: 360 Download |
| QTLCHTKGLR PRNSVGKQQT RNMTRTQFSE QQFMKWVNFV GRLKHSVFKS AKNKLFPAYT 60 LTVAKNPAAG DFTKIQDAID SLPFINLVRV VIKVHAGVYK EKVNIPPFKS FITIEGAGAD 120 KTIVQWGDTA QTRGPRGQPI GTWASATFAV NAPYFIAKNI TFKNTTPVPA PGAVGKQAVA 180 FRISADTATF WGCKFLGAQD TLYDHVGRHY YKDCYIEGSV DFIFGNALSL FEGCHVHAIA 240 QYTGALTAQG RSSLLEDTGF SFVNCKVTGS GALYLGRAWG PFSRVVFAYT DMDNIIIPKG 300 WYNWGDPNRE MTVFYGQYKC KGPGASFAGR VSWARELTDE EAKPFISLSF IDGSEWIKL* 360 |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02432 | PLN02432 | 4.0e-114 | 70 | 358 | 289 | + putative pectinesterase |
| PLN02304 | PLN02304 | 5.0e-117 | 60 | 358 | 307 | + probable pectinesterase |
| PLN02665 | PLN02665 | 1.0e-117 | 60 | 357 | 300 | + pectinesterase family protein |
| PLN02634 | PLN02634 | 7.0e-120 | 19 | 357 | 340 | + probable pectinesterase |
| PLN02682 | PLN02682 | 0 | 14 | 359 | 346 | + pectinesterase family protein |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN63186.1 | 0 | 2 | 359 | 22 | 379 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI27989.1 | 0 | 47 | 359 | 1 | 313 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_197474.1 | 0 | 1 | 359 | 25 | 383 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002330522.1 | 0 | 1 | 359 | 23 | 381 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002514210.1 | 0 | 5 | 359 | 27 | 383 | Pectinesterase PPE8B precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 69 | 358 | 16 | 309 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 8.00141e-43 | 63 | 358 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 5e-29 | 59 | 345 | 31 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 2e-20 | 59 | 345 | 4 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 2e-20 | 59 | 345 | 4 | 328 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DT759916 | 273 | 88 | 360 | 0 |
| EH701256 | 259 | 78 | 336 | 0 |
| DT511044 | 264 | 1 | 264 | 0 |
| ES913245 | 276 | 30 | 305 | 0 |
| EE105585 | 249 | 76 | 324 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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