| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10011124m |
| Family | GT5 |
| Protein Properties | Length: 770 Molecular Weight: 85520.6 Isoelectric Point: 6.3254 |
| Chromosome | Chromosome/Scaffold: 6 Start: 24975344 End: 24981706 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 279 | 762 | 0 |
| NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPLFRHLGNNIYGGGRE DILKRMVLFCKAAIEIPWYVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGLMQYTRSLLVIHNIAHQGRGPVSDFVYTDLPGHYLDLFKLYDPV GGEHFNIFAAGLKTADRVVTVSRGYSWELKTAEGGWGLHNIINEVDWKLSGIVNGIDTKEWSPMYDIHLTSDGYTNYSLDTLRTGKPQCKAALQRELGLP VRDDVPVIGFIGRLDHQKGVDLIAEAIPWMMGQDVQLVMLGTGRPDLEEMLRNFERKHHDKVRGWVGFSVKTAHRITAGADVLLMPSRFEPCGLNQLYAM KYGTIPVVHAVGGLRETVQPFDPFSESGLGWTFDGASAGKLIHALGNCLLTFREYKKSWEGLQRRGMMQDLSWDHAAQLYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 770 Download |
| MASIRSLSFM VETKADSYVV LFSKNQYRPS SSFSAFRPKK SPIFAFLNNS VSGFSFRSNK 60 SGHLLKVKHV KATGAGFVED ESGNEPEDSL QATIEKSKKV LAMQKQLLQQ ISERRKLVSS 120 IKSDIANSEE DEVSYEEREN SFSDLDFTST SSSNVVENQN GIIPSSSGDH STANEAPKLQ 180 SSAANRGPDA GGKESENRLS PEKESIDIDS SKLLKGTDTQ STWSDELPSF LSRTAVISSP 240 KEERHEKDLD QVQQIDSEPI EPKTEEAKPP PLAGANVMNV ILVAAECGPW SKTGGLGDVA 300 GALPKALARR GHRVMVVAPH YGNYAEPQDT GIRKRYRVDR QDIEVAYFQA YIDGVDFVFL 360 DSPLFRHLGN NIYGGGREDI LKRMVLFCKA AIEIPWYVPC GGVCYGDGNL VFIANDWHTA 420 LLPVYLKAYY RDNGLMQYTR SLLVIHNIAH QGRGPVSDFV YTDLPGHYLD LFKLYDPVGG 480 EHFNIFAAGL KTADRVVTVS RGYSWELKTA EGGWGLHNII NEVDWKLSGI VNGIDTKEWS 540 PMYDIHLTSD GYTNYSLDTL RTGKPQCKAA LQRELGLPVR DDVPVIGFIG RLDHQKGVDL 600 IAEAIPWMMG QDVQLVMLGT GRPDLEEMLR NFERKHHDKV RGWVGFSVKT AHRITAGADV 660 LLMPSRFEPC GLNQLYAMKY GTIPVVHAVG GLRETVQPFD PFSESGLGWT FDGASAGKLI 720 HALGNCLLTF REYKKSWEGL QRRGMMQDLS WDHAAQLYEE VLVAAKYQW* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 3.0e-83 | 278 | 766 | 515 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 2.0e-136 | 278 | 767 | 502 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 8.0e-169 | 278 | 762 | 499 | + glycogen synthase; Provisional | ||
| TIGR02095 | glgA | 0 | 278 | 765 | 492 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 279 | 762 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF13168.1 | 0 | 1 | 769 | 1 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
| GenBank | ABV25894.1 | 0 | 1 | 769 | 1 | 751 | starch synthase isoform II [Manihot esculenta] |
| RefSeq | XP_002278470.1 | 0 | 1 | 769 | 1 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
| RefSeq | XP_002324061.1 | 0 | 1 | 769 | 1 | 742 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002531856.1 | 0 | 1 | 769 | 1 | 754 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 278 | 763 | 10 | 509 | A Chain A, Structure And Activity Of A Flavonoid 3-O Glucosyltransferase Reveals The Basis For Plant Natural Product Modification |
| PDB | 3vue_A | 0 | 278 | 763 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 278 | 761 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 278 | 761 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 278 | 761 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO777841 | 319 | 452 | 770 | 0 |
| HO777841 | 397 | 70 | 459 | 0 |
| HO781048 | 392 | 379 | 770 | 0 |
| HO445868 | 438 | 333 | 770 | 0 |
| HO781048 | 44 | 339 | 382 | 2.1 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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