| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10011210m |
| Family | GT41 |
| Protein Properties | Length: 688 Molecular Weight: 76551.2 Isoelectric Point: 5.5405 |
| Chromosome | Chromosome/Scaffold: 6 Start: 20253160 End: 20264672 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GT41 | 363 | 671 | 0 |
| IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR DWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMV REDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITF GSFNNLAKV | |||
| Full Sequence |
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| Protein Sequence Length: 688 Download |
| MAWMEKDVSN GRERDPVQDN GFLKGPQSLP GTSGSPVAVG STLKGFEGKD ALSYANILRS 60 RNKFVDALAL YEIVLEKDSG NVEAHIGKGI CLQMQNMGRL AFDSFSEAVK LDPQNACAHT 120 HCGILYKDEG RLVEAAESYH KALSADPSYK PAAECLAIVL TDLGTSLKLA GNTQDGIQKY 180 YEALKIDPHY APAYYNLGVV YSELMQYDTA LGCYEKAALE RPMYAEAYCN MGVIYKNRGD 240 LESAIACYER CLAVSPNFEI AKNNMAIALT DLGTKVKLEG DINQGVAYYK KALYYNWHYA 300 DAMYNLGVAY GEMLKFDMAI VFYELAFHFN PHCAEACNNL GVIYKDRDNL DKAVECYQMA 360 LSIKPNFSQS LNNLGVVYTV QGKMDAAAEM IEKAIAANPT YAEAYNNLGV LYRDAGSISL 420 AIDAYEQCLK IDPDSRNAGQ NRLLAMNYIN EGHDDKLFEA HRDWGKRFMR LYSQYTSWDN 480 TKDPERPLVI GYVSPDYFTH SVSYFIEAPL VYHDYQNYKV VVYSAVVKAD AKTIRFREKV 540 MKKGGIWRDI YGIDEKKVAA MVREDKIDIL VELTGHTANN KLGMMACQPA PVQVTWIGYP 600 NTTGLPTIDY RITDSLADPP ETKQKHVEEL IRLPECFLCY TPSPEAGPVC PTPALTNGFI 660 TFGSFNNLAK VLVRSYLCLD KCSTCGG* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02917 | PEP_TPR_lipo | 3.0e-19 | 52 | 434 | 418 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 1.0e-20 | 63 | 456 | 428 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| COG3914 | Spy | 4.0e-39 | 317 | 670 | 383 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| Swiss-Prot | O82039 | 0 | 1 | 671 | 1 | 671 | SPY_PETHY RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY |
| RefSeq | XP_002281883.1 | 0 | 1 | 671 | 1 | 669 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002308458.1 | 0 | 1 | 671 | 1 | 671 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323412.1 | 0 | 1 | 671 | 1 | 675 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530535.1 | 0 | 1 | 671 | 1 | 672 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1w3b_B | 3e-38 | 89 | 441 | 41 | 378 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 7e-27 | 56 | 375 | 75 | 380 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 8e-19 | 56 | 313 | 143 | 386 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 0.000000000003 | 52 | 240 | 207 | 388 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_A | 3e-38 | 89 | 441 | 41 | 378 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GO867600 | 327 | 321 | 647 | 0 |
| GT041789 | 327 | 345 | 671 | 0 |
| GO867600 | 119 | 162 | 278 | 0.0000000000001 |
| GO867600 | 147 | 214 | 358 | 0.000000000007 |
| GO867600 | 136 | 57 | 190 | 0.29 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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