Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10011380m |
Family | CBM43 |
Protein Properties | Length: 569 Molecular Weight: 59123.2 Isoelectric Point: 6.0964 |
Chromosome | Chromosome/Scaffold: 6 Start: 1108260 End: 1111301 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 421 | 502 | 7e-35 |
WCVAKNGVSETAIQQALDYACGIGGADCSLIQQGASCYNPNTLQNHASFAFNSYYQKNPSPTSCDFGGTAMIVNTNPSTGSC |
Full Sequence |
---|
Protein Sequence Length: 569 Download |
MAKAASKYFF LFLFNILTIS SSATLVGFAF NGRENTSAAS STSEVTSFDS LGLKLDNVPS 60 QRIRVYVADH RVLNFSSLLN SNASSSVDLY LNLSLVVDLM QSELSAISWL ETNVLTTHPH 120 VNIKSIILSC SSEEFEGKNV LPLILSALKS FHSALNRIHL DMKVKVSVAF PLPLLENLNT 180 SHEGEIGLIF GYIKKTGSVV IIEAGIDGKL SMAEVLVQPL LKKAIKATSI LPDSDILIDL 240 VMKSPLVPDA KQVAEFTEIV SKFFENNSQI DELYADVASS MGEFVQKGLK IVRRLQNSLK 300 TSIHDTTIFP TTPVPPDNKP TPTIVTVPAT NPVTVSPANP SGTPLPIPST TPVNIPPATP 360 VNPAAPVTNP ATIPAPVTVP GGAQPVTNPA AAYPPPAGGN VPVPVTPPAT TNAPAIPGQS 420 WCVAKNGVSE TAIQQALDYA CGIGGADCSL IQQGASCYNP NTLQNHASFA FNSYYQKNPS 480 PTSCDFGGTA MIVNTNPSTG SCVFPSSSSS SSSSAPPSPP TSALTPPAQP SSTTPPATTT 540 APPGTTTSPP GTTTSPPVTT SPAPGTSG* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 9.0e-25 | 420 | 491 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-38 | 420 | 496 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN65737.1 | 0 | 134 | 503 | 27 | 421 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276666.1 | 0 | 21 | 503 | 22 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319461.1 | 0 | 1 | 535 | 1 | 554 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002463588.1 | 0 | 104 | 508 | 78 | 519 | hypothetical protein SORBIDRAFT_01g002540 [Sorghum bicolor] |
RefSeq | XP_002512573.1 | 0 | 212 | 504 | 1 | 308 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 3e-18 | 420 | 509 | 12 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |