Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10011953m |
Family | CE8 |
Protein Properties | Length: 384 Molecular Weight: 42250.7 Isoelectric Point: 8.1348 |
Chromosome | Chromosome/Scaffold: 6 Start: 18457555 End: 18460527 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 82 | 374 | 0 |
CVDRNGCCNFTSVQSAVDAVPNLSLKRNIVLINSGIYYEKVTVPKTKPNITFQGQGYTSTAIAWNDTAKSANGTFYSGSVQVFASNFMAKNISFMNVAPI PSPGDVGAQAVAIRISGDQSAFFGCGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNARSFYENCQLISMANPVAPGSKAINGAVTAHGRASKDENSGF AFVNCTIGGTGRIWLGRAWRPFSRVVFLFASMTDIIAPEGWNDFNDPTRDQTVFYGEYNCTGAGSDMTMRAPYVQRLNDTQASLFLNTSFIDG |
Full Sequence |
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Protein Sequence Length: 384 Download |
MNLLSIVLAI LVAILSSTFL INPNTLLTTF LPPNIVTKFI PYNIDRGHRH RKRPDHRKKV 60 SICDDFPKDF APPDTNTTSY FCVDRNGCCN FTSVQSAVDA VPNLSLKRNI VLINSGIYYE 120 KVTVPKTKPN ITFQGQGYTS TAIAWNDTAK SANGTFYSGS VQVFASNFMA KNISFMNVAP 180 IPSPGDVGAQ AVAIRISGDQ SAFFGCGFFG AQDTLHDDRG RHYFKDCYIQ GSIDFIFGNA 240 RSFYENCQLI SMANPVAPGS KAINGAVTAH GRASKDENSG FAFVNCTIGG TGRIWLGRAW 300 RPFSRVVFLF ASMTDIIAPE GWNDFNDPTR DQTVFYGEYN CTGAGSDMTM RAPYVQRLND 360 TQASLFLNTS FIDGDQWLQS YNN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 5.0e-95 | 74 | 379 | 314 | + pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-103 | 83 | 378 | 303 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-105 | 83 | 378 | 297 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-123 | 83 | 379 | 304 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 0 | 60 | 383 | 324 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB71446.1 | 0 | 55 | 379 | 65 | 387 | Similar to Prunus pectinesterase (gb |
GenBank | ABN08648.1 | 0 | 2 | 380 | 7 | 389 | Pectinesterase [Medicago truncatula] |
RefSeq | NP_172023.1 | 0 | 55 | 379 | 65 | 389 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002323171.1 | 0 | 15 | 383 | 1 | 380 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521065.1 | 0 | 28 | 382 | 43 | 395 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 82 | 380 | 10 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-39 | 82 | 380 | 6 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 7e-16 | 91 | 372 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 7e-16 | 91 | 372 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 7e-16 | 91 | 372 | 18 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |