| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10012162m |
| Family | PL1 |
| Protein Properties | Length: 333 Molecular Weight: 37603.7 Isoelectric Point: 8.6069 |
| Chromosome | Chromosome/Scaffold: 6 Start: 12700076 End: 12705209 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 112 | 291 | 0 |
| IVFEVSGTIHLRSHLSVSSYKTIDGRGQRVKLTGKGLRLKECEHVIICNLEFEGGKGPDVDAIQIKPKSKHIWIDRCSLRDYDDGLIDITRESTDITVSR CHFSSHDKTMLIGADPSHVADRCIRVTIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVDSQIYSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 333 Download |
| MGNSHGHHHH HRNEANSYFP HQTPTPTPPP FKFGPSDHHQ HQPAAQFQNN STMSLPYAHV 60 DCSLRALAGQ AEGFGRLAIG GLHGPLYHVT TLADDGPGSL REGCRMKEPL WIVFEVSGTI 120 HLRSHLSVSS YKTIDGRGQR VKLTGKGLRL KECEHVIICN LEFEGGKGPD VDAIQIKPKS 180 KHIWIDRCSL RDYDDGLIDI TRESTDITVS RCHFSSHDKT MLIGADPSHV ADRCIRVTIH 240 HCFFDGTRQR HPRVRYAKVH LYNNYTRNWG IYAVCASVDS QIYSQCNIYE AGQKKMAFKY 300 LTEKVSVLSI FFFSIPFLNQ SSRFLCFQLY MG* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 1.0e-37 | 107 | 287 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 2.0e-42 | 80 | 298 | 238 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 5.0e-67 | 126 | 292 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 306 | 1 | 309 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 306 | 1 | 312 | unknown [Populus trichocarpa] |
| EMBL | CAN80964.1 | 0 | 1 | 310 | 1 | 303 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI32661.1 | 0 | 55 | 306 | 4 | 255 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277576.1 | 0 | 1 | 306 | 1 | 299 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 1e-38 | 67 | 291 | 21 | 270 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 1e-38 | 67 | 291 | 21 | 270 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 5e-26 | 123 | 289 | 125 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 2e-25 | 79 | 297 | 22 | 254 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 4e-22 | 133 | 290 | 82 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY289690 | 304 | 3 | 306 | 0 |
| FC888541 | 291 | 16 | 306 | 0 |
| DY271752 | 291 | 16 | 306 | 0 |
| DY283964 | 306 | 1 | 306 | 0 |
| FC881183 | 290 | 3 | 292 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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